JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RIMBP2_chr12_130391133_130721299	0/0	c0046	4089	1	1	0	0	0	0	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	c0047	4089	1	1	0	0	0	0	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	c0048	4089	1	0	0	0	1	0	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	c0049	4089	1	1	0	0	0	0	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	c0050	4089	1	1	0	0	0	0	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	c0051	4089	1	1	0	0	0	0	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP2_chr12_130391133_130721299	0/0	c0052	4089	1	0	0	0	0	1	copy fasta	RIMBP2	chr12	130391133	130721299
RIMBP3B_chr22_21378751_21394478	0/0	c0001	4920	11	0	6	5	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0002	4917	9	2	4	2	0	1	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0003	4917	4	0	2	0	0	2	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0004	4920	4	0	2	2	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0005	4917	3	0	0	3	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0006	4920	3	1	2	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0007	4920	2	2	0	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0008	4920	2	0	0	2	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0009	4920	2	0	1	1	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0010	4920	1	0	0	1	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0011	4920	1	1	0	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0012	4920	1	0	1	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0013	4926	1	1	0	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0014	4920	1	0	1	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0015	4920	1	1	0	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0016	4920	1	0	0	0	0	1	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0017	4917	1	1	0	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0018	4920	1	0	1	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0019	4920	1	1	0	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0020	4920	1	1	0	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0021	4920	1	1	0	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0022	4920	1	1	0	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0023	4920	1	1	0	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0024	4926	1	1	0	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0025	4920	1	1	0	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0026	4922	1	0	1	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0027	4920	1	0	0	1	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0028	4920	1	0	0	0	0	1	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0029	4926	1	1	0	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0030	4920	1	0	0	1	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0031	4920	1	0	0	0	0	1	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0032	4920	1	0	0	1	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0033	4920	1	0	0	1	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0034	4920	1	0	0	1	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0035	4920	1	1	0	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0036	4920	1	0	0	1	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0037	4920	1	1	0	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0038	4920	1	1	0	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0039	4920	1	0	0	1	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0040	4920	1	0	1	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0041	4920	1	1	0	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0042	4920	1	0	0	1	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0043	4920	1	0	0	1	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478