JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RIMBP3B_chr22_21378751_21394478	0/0	c0044	4920	1	0	0	1	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0045	4920	1	0	0	1	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0046	4920	1	0	0	0	0	1	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0047	4920	1	0	0	1	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0048	4920	1	0	0	0	0	1	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0049	4920	1	0	0	0	0	1	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0050	4920	1	0	0	0	0	1	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0051	4920	1	0	0	0	0	1	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0052	4928	1	1	0	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0053	4928	1	1	0	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0054	4922	1	0	1	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0055	4922	1	1	0	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0056	4922	1	1	0	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0057	4922	1	0	0	1	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0058	4922	1	0	1	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0059	4922	1	0	0	0	0	1	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0060	4922	1	0	1	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0061	4920	1	1	0	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0062	4920	1	1	0	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0063	4920	1	1	0	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0064	4926	1	1	0	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0065	4926	1	1	0	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0066	4920	1	0	0	1	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0067	4920	1	1	0	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0068	4920	1	1	0	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0069	4920	1	1	0	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0070	4920	1	1	0	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0071	4920	1	0	1	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0072	4920	1	1	0	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0073	4920	1	1	0	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0074	4922	1	0	1	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0075	4920	1	0	0	1	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0076	4920	1	0	0	0	0	1	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0077	4920	1	0	0	0	0	1	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0078	4920	1	0	1	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0079	4920	1	0	0	1	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0080	4920	1	0	0	0	0	1	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0081	4920	1	0	0	1	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0082	4920	1	0	0	0	0	1	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0083	4920	1	1	0	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0084	4920	1	1	0	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0085	4920	1	1	0	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0086	4920	1	0	0	1	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3B_chr22_21378751_21394478	0/0	c0087	4922	1	1	0	0	0	0	copy fasta	RIMBP3B	chr22	21378751	21394478
RIMBP3C_chr22_21540666_21556461	0/0	c0001	4920	21	1	5	11	1	3	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0002	4917	19	3	5	10	0	1	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0003	4920	8	0	1	5	0	2	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0004	4917	7	0	0	7	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0005	4920	7	0	0	5	0	2	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0006	4920	7	0	2	5	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461