JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RIMBP3C_chr22_21540666_21556461	0/0	c0007	4917	6	0	1	2	1	2	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0008	4920	4	0	4	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0009	4920	4	0	0	2	0	2	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0010	4920	4	0	2	2	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0011	4920	3	0	1	2	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0012	4920	3	1	0	2	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0013	4917	3	1	1	0	0	1	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0014	4920	3	3	0	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0015	4920	3	0	3	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0016	4926	3	0	0	3	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0017	4920	3	0	1	1	0	1	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0018	4920	2	0	2	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0019	4923	2	2	0	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0020	4917	2	2	0	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0021	4917	2	0	2	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0022	4920	2	2	0	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0023	4920	2	0	0	2	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0024	4920	2	2	0	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0025	4920	2	0	0	2	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0026	4920	2	1	1	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0027	4920	1	0	0	1	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0028	4920	1	0	0	1	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0029	4920	1	0	0	1	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0030	4920	1	0	0	1	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0031	4920	1	0	0	1	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0032	4920	1	0	1	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0033	4920	1	0	1	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0034	4920	1	0	0	0	0	1	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0035	4926	1	1	0	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0036	4920	1	1	0	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0037	4920	1	0	1	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0038	4926	1	1	0	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0039	4917	1	0	0	0	0	1	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0040	4917	1	0	1	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0041	4923	1	1	0	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0042	4917	1	0	0	1	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0043	4917	1	0	0	1	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0044	4917	1	0	0	0	0	1	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0045	4923	1	1	0	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0046	4917	1	0	0	0	0	1	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0047	4917	1	0	0	1	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0048	4917	1	0	0	1	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0049	4917	1	0	0	1	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0050	4917	1	1	0	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0051	4917	1	0	0	1	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0052	4917	1	0	1	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0053	4917	1	0	0	0	0	1	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0054	4917	1	0	0	0	0	1	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0055	4917	1	0	0	1	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0056	4917	1	1	0	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461