JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	SAS	cseq	genename	chr	start	end
RIMBP3C_chr22_21540666_21556461	0/0	c0057	4917	1	0	1	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0058	4920	1	1	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0059	4920	1	1	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0060	4920	1	1	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0061	4920	1	1	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0062	4920	1	1	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0063	4920	1	1	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0064	4920	1	0	0	1	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0065	4920	1	0	0	1	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0066	4920	1	0	0	1	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0067	4920	1	0	0	1	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0068	4920	1	0	0	1	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0069	4920	1	1	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0070	4920	1	0	0	0	1	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0071	4926	1	1	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0072	4920	1	0	1	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0073	4920	1	1	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0074	4920	1	0	1	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0075	4920	1	1	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0076	4920	1	1	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0077	4920	1	1	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0078	4920	1	1	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0079	4920	1	1	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0080	4920	1	1	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0081	4920	1	1	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0082	4920	1	1	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0083	4920	1	0	0	0	1	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0084	4920	1	0	0	1	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0085	4920	1	0	0	1	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0086	4920	1	0	0	0	1	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0087	4920	1	0	0	1	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0088	4920	1	0	0	1	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0089	4920	1	0	0	1	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0090	4920	1	0	0	1	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0091	4920	1	0	0	1	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0092	4920	1	1	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0093	4920	1	0	0	1	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0094	4920	1	0	1	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0095	4920	1	0	0	1	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0096	4920	1	0	0	1	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0097	4920	1	1	0	0	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0098	4920	1	0	0	1	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0099	4920	1	0	0	1	0	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3C_chr22_21540666_21556461	0/0	c0100	4981	1	0	0	0	1	copy fasta	RIMBP3C	chr22	21540666	21556461
RIMBP3_chr22_18600815_18616919	0/0	c0001	4920	6	2	3	0	1	copy fasta	RIMBP3	chr22	18600815	18616919
RIMBP3_chr22_18600815_18616919	0/0	c0002	4920	3	3	0	0	0	copy fasta	RIMBP3	chr22	18600815	18616919
RIMBP3_chr22_18600815_18616919	0/0	c0003	4920	2	0	1	0	1	copy fasta	RIMBP3	chr22	18600815	18616919
RIMBP3_chr22_18600815_18616919	0/0	c0004	4920	2	1	1	0	0	copy fasta	RIMBP3	chr22	18600815	18616919
RIMBP3_chr22_18600815_18616919	0/0	c0005	4920	2	2	0	0	0	copy fasta	RIMBP3	chr22	18600815	18616919
RIMBP3_chr22_18600815_18616919	0/0	c0006	4920	2	2	0	0	0	copy fasta	RIMBP3	chr22	18600815	18616919