JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RIMBP3_chr22_18600815_18616919	0/0	c0007	4920	1	0	1	0	0	0	copy fasta	RIMBP3	chr22	18600815	18616919
RIMBP3_chr22_18600815_18616919	0/0	c0008	4920	1	0	0	0	0	1	copy fasta	RIMBP3	chr22	18600815	18616919
RIMBP3_chr22_18600815_18616919	0/0	c0009	4920	1	1	0	0	0	0	copy fasta	RIMBP3	chr22	18600815	18616919
RIMBP3_chr22_18600815_18616919	0/0	c0010	4920	1	1	0	0	0	0	copy fasta	RIMBP3	chr22	18600815	18616919
RIMBP3_chr22_18600815_18616919	0/0	c0011	4920	1	1	0	0	0	0	copy fasta	RIMBP3	chr22	18600815	18616919
RIMBP3_chr22_18600815_18616919	0/0	c0012	4920	1	1	0	0	0	0	copy fasta	RIMBP3	chr22	18600815	18616919
RIMBP3_chr22_18600815_18616919	0/0	c0013	4920	1	1	0	0	0	0	copy fasta	RIMBP3	chr22	18600815	18616919
RIMBP3_chr22_18600815_18616919	0/0	c0014	4920	1	0	0	0	0	1	copy fasta	RIMBP3	chr22	18600815	18616919
RIMBP3_chr22_18600815_18616919	0/0	c0015	4920	1	1	0	0	0	0	copy fasta	RIMBP3	chr22	18600815	18616919
RIMBP3_chr22_18600815_18616919	0/0	c0016	4920	1	1	0	0	0	0	copy fasta	RIMBP3	chr22	18600815	18616919
RIMBP3_chr22_18600815_18616919	0/0	c0017	4926	1	1	0	0	0	0	copy fasta	RIMBP3	chr22	18600815	18616919
RIMBP3_chr22_18600815_18616919	0/0	c0018	4920	1	1	0	0	0	0	copy fasta	RIMBP3	chr22	18600815	18616919
RIMBP3_chr22_18600815_18616919	0/0	c0019	4926	1	1	0	0	0	0	copy fasta	RIMBP3	chr22	18600815	18616919
RIMKLA_chr1_42375792_42429232	0/0	c0001	1176	184	57	30	62	13	22	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	1/1	c0002	1176	156	26	27	82	2	17	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	c0003	1176	6	6	0	0	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	c0004	1176	3	0	2	0	1	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	c0005	1176	2	2	0	0	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	c0006	1176	1	0	0	1	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	c0007	1176	1	0	0	0	0	1	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	c0008	1176	1	0	0	1	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	c0009	1176	1	1	0	0	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLA_chr1_42375792_42429232	0/0	c0010	1176	1	0	1	0	0	0	copy fasta	RIMKLA	chr1	42375792	42429232
RIMKLB_chr12_8692991_8782191	0/1	c0001	1161	258	57	57	100	8	35	copy fasta	RIMKLB	chr12	8692991	8782191
RIMKLB_chr12_8692991_8782191	0/0	c0002	1161	22	15	2	4	0	1	copy fasta	RIMKLB	chr12	8692991	8782191
RIMKLB_chr12_8692991_8782191	0/0	c0003	1161	9	8	1	0	0	0	copy fasta	RIMKLB	chr12	8692991	8782191
RIMKLB_chr12_8692991_8782191	0/0	c0004	1161	2	1	1	0	0	0	copy fasta	RIMKLB	chr12	8692991	8782191
RIMKLB_chr12_8692991_8782191	0/0	c0005	1161	1	1	0	0	0	0	copy fasta	RIMKLB	chr12	8692991	8782191
RIMKLB_chr12_8692991_8782191	0/0	c0006	1161	1	0	1	0	0	0	copy fasta	RIMKLB	chr12	8692991	8782191
RIMKLB_chr12_8692991_8782191	1/0	c0007	1161	1	0	0	0	0	0	copy fasta	RIMKLB	chr12	8692991	8782191
RIMOC1_chr5_41899344_41926636	1/1	c0001	885	311	89	71	99	16	34	copy fasta	RIMOC1	chr5	41899344	41926636
RIMOC1_chr5_41899344_41926636	0/0	c0002	885	5	5	0	0	0	0	copy fasta	RIMOC1	chr5	41899344	41926636
RIMOC1_chr5_41899344_41926636	0/0	c0003	885	1	0	1	0	0	0	copy fasta	RIMOC1	chr5	41899344	41926636
RIMOC1_chr5_41899344_41926636	0/0	c0004	885	1	0	0	1	0	0	copy fasta	RIMOC1	chr5	41899344	41926636
RIMS1_chr6_71881550_72408145	0/0	c0001	5079	66	22	20	10	3	11	copy fasta	RIMS1	chr6	71881550	72408145
RIMS1_chr6_71881550_72408145	0/1	c0002	5079	24	4	8	4	2	5	copy fasta	RIMS1	chr6	71881550	72408145
RIMS1_chr6_71881550_72408145	0/0	c0003	5079	20	5	4	1	1	9	copy fasta	RIMS1	chr6	71881550	72408145
RIMS1_chr6_71881550_72408145	0/0	c0004	5079	6	5	0	0	0	1	copy fasta	RIMS1	chr6	71881550	72408145
RIMS1_chr6_71881550_72408145	0/0	c0005	5079	3	3	0	0	0	0	copy fasta	RIMS1	chr6	71881550	72408145
RIMS1_chr6_71881550_72408145	0/0	c0006	5079	3	3	0	0	0	0	copy fasta	RIMS1	chr6	71881550	72408145
RIMS1_chr6_71881550_72408145	1/0	c0007	5079	2	1	0	0	0	0	copy fasta	RIMS1	chr6	71881550	72408145
RIMS1_chr6_71881550_72408145	0/0	c0008	5079	2	2	0	0	0	0	copy fasta	RIMS1	chr6	71881550	72408145
RIMS1_chr6_71881550_72408145	0/0	c0009	5079	2	1	1	0	0	0	copy fasta	RIMS1	chr6	71881550	72408145
RIMS1_chr6_71881550_72408145	0/0	c0010	5079	1	0	0	0	0	1	copy fasta	RIMS1	chr6	71881550	72408145
RIMS1_chr6_71881550_72408145	0/0	c0011	5079	1	1	0	0	0	0	copy fasta	RIMS1	chr6	71881550	72408145
RIMS1_chr6_71881550_72408145	0/0	c0012	5079	1	1	0	0	0	0	copy fasta	RIMS1	chr6	71881550	72408145
RIMS1_chr6_71881550_72408145	0/0	c0013	5079	1	0	0	0	0	1	copy fasta	RIMS1	chr6	71881550	72408145
RIMS1_chr6_71881550_72408145	0/0	c0014	5079	1	0	1	0	0	0	copy fasta	RIMS1	chr6	71881550	72408145
RIMS1_chr6_71881550_72408145	0/0	c0015	5079	1	1	0	0	0	0	copy fasta	RIMS1	chr6	71881550	72408145
RIMS1_chr6_71881550_72408145	0/0	c0016	5079	1	1	0	0	0	0	copy fasta	RIMS1	chr6	71881550	72408145