JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RIMS1_chr6_71881550_72408145	0/0	c0017	5079	1	0	1	0	0	0	copy fasta	RIMS1	chr6	71881550	72408145
RIMS1_chr6_71881550_72408145	0/0	c0018	5079	1	0	0	0	0	1	copy fasta	RIMS1	chr6	71881550	72408145
RIMS1_chr6_71881550_72408145	0/0	c0019	5079	1	0	1	0	0	0	copy fasta	RIMS1	chr6	71881550	72408145
RIMS1_chr6_71881550_72408145	0/0	c0020	5079	1	0	0	0	0	1	copy fasta	RIMS1	chr6	71881550	72408145
RIMS1_chr6_71881550_72408145	0/0	c0021	5079	1	0	0	1	0	0	copy fasta	RIMS1	chr6	71881550	72408145
RIMS2_chr8_103495610_104259430	1/1	c0001	4824	52	26	7	8	4	5	copy fasta	RIMS2	chr8	103495610	104259430
RIMS2_chr8_103495610_104259430	0/0	c0002	4824	30	6	4	8	3	9	copy fasta	RIMS2	chr8	103495610	104259430
RIMS2_chr8_103495610_104259430	0/0	c0003	4824	29	19	2	2	2	4	copy fasta	RIMS2	chr8	103495610	104259430
RIMS2_chr8_103495610_104259430	0/0	c0004	4824	17	5	1	6	1	4	copy fasta	RIMS2	chr8	103495610	104259430
RIMS2_chr8_103495610_104259430	0/0	c0005	4824	6	6	0	0	0	0	copy fasta	RIMS2	chr8	103495610	104259430
RIMS2_chr8_103495610_104259430	0/0	c0006	4824	4	0	0	3	0	1	copy fasta	RIMS2	chr8	103495610	104259430
RIMS2_chr8_103495610_104259430	0/0	c0007	4824	4	4	0	0	0	0	copy fasta	RIMS2	chr8	103495610	104259430
RIMS2_chr8_103495610_104259430	0/0	c0008	4824	3	0	0	3	0	0	copy fasta	RIMS2	chr8	103495610	104259430
RIMS2_chr8_103495610_104259430	0/0	c0009	4824	3	0	0	3	0	0	copy fasta	RIMS2	chr8	103495610	104259430
RIMS2_chr8_103495610_104259430	0/0	c0010	4824	2	1	1	0	0	0	copy fasta	RIMS2	chr8	103495610	104259430
RIMS2_chr8_103495610_104259430	0/0	c0011	4824	2	1	1	0	0	0	copy fasta	RIMS2	chr8	103495610	104259430
RIMS2_chr8_103495610_104259430	0/0	c0012	4824	2	2	0	0	0	0	copy fasta	RIMS2	chr8	103495610	104259430
RIMS2_chr8_103495610_104259430	0/0	c0013	4824	1	1	0	0	0	0	copy fasta	RIMS2	chr8	103495610	104259430
RIMS2_chr8_103495610_104259430	0/0	c0014	4824	1	1	0	0	0	0	copy fasta	RIMS2	chr8	103495610	104259430
RIMS2_chr8_103495610_104259430	0/0	c0015	4824	1	1	0	0	0	0	copy fasta	RIMS2	chr8	103495610	104259430
RIMS2_chr8_103495610_104259430	0/0	c0016	4824	1	1	0	0	0	0	copy fasta	RIMS2	chr8	103495610	104259430
RIMS2_chr8_103495610_104259430	0/0	c0017	4824	1	0	1	0	0	0	copy fasta	RIMS2	chr8	103495610	104259430
RIMS2_chr8_103495610_104259430	0/0	c0018	4824	1	1	0	0	0	0	copy fasta	RIMS2	chr8	103495610	104259430
RIMS2_chr8_103495610_104259430	0/0	c0019	4824	1	0	0	0	0	1	copy fasta	RIMS2	chr8	103495610	104259430
RIMS2_chr8_103495610_104259430	0/0	c0020	4824	1	0	1	0	0	0	copy fasta	RIMS2	chr8	103495610	104259430
RIMS2_chr8_103495610_104259430	0/0	c0021	4824	1	0	0	1	0	0	copy fasta	RIMS2	chr8	103495610	104259430
RIMS2_chr8_103495610_104259430	0/0	c0022	4824	1	0	0	1	0	0	copy fasta	RIMS2	chr8	103495610	104259430
RIMS2_chr8_103495610_104259430	0/0	c0023	4824	1	1	0	0	0	0	copy fasta	RIMS2	chr8	103495610	104259430
RIMS2_chr8_103495610_104259430	0/0	c0024	4824	1	0	0	1	0	0	copy fasta	RIMS2	chr8	103495610	104259430
RIMS2_chr8_103495610_104259430	0/0	c0025	4824	1	0	0	1	0	0	copy fasta	RIMS2	chr8	103495610	104259430
RIMS2_chr8_103495610_104259430	0/0	c0026	4824	1	1	0	0	0	0	copy fasta	RIMS2	chr8	103495610	104259430
RIMS2_chr8_103495610_104259430	0/0	c0027	4824	1	1	0	0	0	0	copy fasta	RIMS2	chr8	103495610	104259430
RIMS2_chr8_103495610_104259430	0/0	c0028	4824	1	1	0	0	0	0	copy fasta	RIMS2	chr8	103495610	104259430
RIMS2_chr8_103495610_104259430	0/0	c0029	4824	1	1	0	0	0	0	copy fasta	RIMS2	chr8	103495610	104259430
RIMS2_chr8_103495610_104259430	0/0	c0030	4824	1	0	0	1	0	0	copy fasta	RIMS2	chr8	103495610	104259430
RIMS3_chr1_40615680_40670682	1/1	c0001	927	359	81	77	146	14	39	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	c0002	927	9	9	0	0	0	0	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	c0003	927	2	0	0	0	0	2	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	c0004	927	1	0	0	0	0	1	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	c0005	927	1	0	0	1	0	0	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	c0006	927	1	0	0	1	0	0	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	c0007	927	1	1	0	0	0	0	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	c0008	927	1	0	1	0	0	0	copy fasta	RIMS3	chr1	40615680	40670682
RIMS3_chr1_40615680_40670682	0/0	c0009	927	1	1	0	0	0	0	copy fasta	RIMS3	chr1	40615680	40670682
RIMS4_chr20_44746808_44815546	1/1	c0001	810	382	94	72	152	14	48	copy fasta	RIMS4	chr20	44746808	44815546
RIN1_chr11_66325241_66341434	0/1	c0001	2352	198	15	43	93	11	35	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	c0002	2352	109	23	16	58	4	8	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	c0003	2352	55	22	6	24	2	1	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	c0004	2352	8	7	1	0	0	0	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	c0005	2352	8	7	1	0	0	0	copy fasta	RIN1	chr11	66325241	66341434