JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RIN1_chr11_66325241_66341434	1/0	c0006	2352	7	6	0	0	0	0	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	c0007	2352	3	3	0	0	0	0	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	c0008	2352	3	0	0	3	0	0	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	c0009	2352	3	3	0	0	0	0	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	c0010	2352	3	0	0	3	0	0	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	c0011	2352	2	0	1	0	1	0	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	c0012	2352	2	0	2	0	0	0	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	c0013	2352	2	0	0	2	0	0	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	c0014	2352	1	0	1	0	0	0	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	c0015	2352	1	0	0	1	0	0	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	c0016	2352	1	1	0	0	0	0	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	c0017	2352	1	0	0	0	0	1	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	c0018	2352	1	1	0	0	0	0	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	c0019	2352	1	1	0	0	0	0	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	c0020	2352	1	0	0	1	0	0	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	c0021	2352	1	0	0	1	0	0	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	c0022	2352	1	1	0	0	0	0	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	c0023	2352	1	1	0	0	0	0	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	c0024	2352	1	0	0	1	0	0	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	c0025	2352	1	0	0	0	0	1	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	c0026	2352	1	1	0	0	0	0	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	c0027	2352	1	0	1	0	0	0	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	c0028	2352	1	1	0	0	0	0	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	c0029	2352	1	0	0	1	0	0	copy fasta	RIN1	chr11	66325241	66341434
RIN1_chr11_66325241_66341434	0/0	c0030	2352	1	1	0	0	0	0	copy fasta	RIN1	chr11	66325241	66341434
RIN2_chr20_19753258_20007456	1/1	c0001	2688	108	36	18	21	3	28	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	c0002	2688	97	22	18	52	1	4	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	c0003	2688	29	7	5	11	3	3	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	c0004	2688	15	4	4	6	0	1	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	c0005	2688	9	2	3	0	2	2	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	c0006	2688	3	3	0	0	0	0	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	c0007	2688	2	2	0	0	0	0	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	c0008	2688	1	1	0	0	0	0	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	c0009	2688	1	0	0	0	1	0	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	c0010	2688	1	1	0	0	0	0	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	c0011	2688	1	1	0	0	0	0	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	c0012	2688	1	1	0	0	0	0	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	c0013	2688	1	0	1	0	0	0	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	c0014	2688	1	0	0	1	0	0	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	c0015	2688	1	0	1	0	0	0	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	c0016	2688	1	0	0	1	0	0	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	c0017	2688	1	0	1	0	0	0	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	c0018	2688	1	0	1	0	0	0	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	c0019	2688	1	1	0	0	0	0	copy fasta	RIN2	chr20	19753258	20007456
RIN2_chr20_19753258_20007456	0/0	c0020	2688	1	1	0	0	0	0	copy fasta	RIN2	chr20	19753258	20007456
RIN3_chr14_92508781_92693994	0/0	c0001	2955	61	1	6	46	2	6	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/1	c0002	2955	46	17	13	7	2	6	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	c0003	2955	40	5	7	26	0	2	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	c0004	2958	22	2	2	13	0	5	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	c0005	2958	21	8	8	2	1	2	copy fasta	RIN3	chr14	92508781	92693994