JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RIN3_chr14_92508781_92693994	0/0	c0006	2955	21	2	1	15	0	3	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	c0007	2958	19	1	9	1	1	7	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	c0008	2958	9	0	3	0	1	5	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	c0009	2955	9	1	6	0	2	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	c0010	2958	6	2	0	3	0	1	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	c0011	2955	5	5	0	0	0	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	c0012	2955	4	4	0	0	0	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	c0013	2955	4	0	2	0	1	1	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	c0014	2958	3	3	0	0	0	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	c0015	2955	3	3	0	0	0	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	c0016	2955	3	0	0	0	0	3	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	c0017	2955	3	3	0	0	0	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	c0018	2958	3	3	0	0	0	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	c0019	2955	3	3	0	0	0	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	c0020	2958	3	0	1	0	2	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	c0021	2958	2	0	1	1	0	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	c0022	2955	2	0	0	2	0	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	1/0	c0023	2958	2	1	0	0	0	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	c0024	2955	2	0	2	0	0	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	c0025	2955	2	2	0	0	0	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	c0026	2955	2	2	0	0	0	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	c0027	2955	2	2	0	0	0	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	c0028	2958	1	0	1	0	0	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	c0029	2958	1	1	0	0	0	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	c0030	2955	1	1	0	0	0	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	c0031	2955	1	1	0	0	0	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	c0032	2958	1	0	0	0	0	1	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	c0033	2958	1	0	1	0	0	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	c0034	2955	1	0	0	1	0	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	c0035	2955	1	0	0	1	0	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	c0036	2955	1	0	0	1	0	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	c0037	2955	1	1	0	0	0	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	c0038	2955	1	1	0	0	0	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	c0039	2958	1	1	0	0	0	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	c0040	2955	1	1	0	0	0	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	c0041	2955	1	0	0	1	0	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	c0042	2955	1	0	1	0	0	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	c0043	2958	1	0	0	1	0	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	c0044	2955	1	0	1	0	0	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	c0045	2955	1	1	0	0	0	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	c0046	2955	1	0	1	0	0	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	c0047	2955	1	0	0	1	0	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	c0048	2958	1	0	1	0	0	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	c0049	2955	1	1	0	0	0	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	c0050	2955	1	0	0	1	0	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	c0051	2955	1	0	0	1	0	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	c0052	2958	1	1	0	0	0	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	c0053	2958	1	1	0	0	0	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	c0054	2955	1	1	0	0	0	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	c0055	2958	1	0	0	0	1	0	copy fasta	RIN3	chr14	92508781	92693994