JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ASTN2_chr9_116418112_117420057	0/0	c0001	4020	30	21	6	1	1	1	copy fasta	ASTN2	chr9	116418112	117420057
ASTN2_chr9_116418112_117420057	0/1	c0002	4020	26	3	10	6	3	3	copy fasta	ASTN2	chr9	116418112	117420057
ASTN2_chr9_116418112_117420057	0/0	c0003	4020	13	7	4	1	1	0	copy fasta	ASTN2	chr9	116418112	117420057
ASTN2_chr9_116418112_117420057	0/0	c0004	4023	4	4	0	0	0	0	copy fasta	ASTN2	chr9	116418112	117420057
ASTN2_chr9_116418112_117420057	0/0	c0005	4020	4	3	1	0	0	0	copy fasta	ASTN2	chr9	116418112	117420057
ASTN2_chr9_116418112_117420057	1/0	c0006	4020	2	1	0	0	0	0	copy fasta	ASTN2	chr9	116418112	117420057
ASTN2_chr9_116418112_117420057	0/0	c0007	4020	2	1	1	0	0	0	copy fasta	ASTN2	chr9	116418112	117420057
ASTN2_chr9_116418112_117420057	0/0	c0008	4020	2	1	1	0	0	0	copy fasta	ASTN2	chr9	116418112	117420057
ASTN2_chr9_116418112_117420057	0/0	c0009	4020	2	1	0	1	0	0	copy fasta	ASTN2	chr9	116418112	117420057
ASTN2_chr9_116418112_117420057	0/0	c0010	4020	2	0	1	1	0	0	copy fasta	ASTN2	chr9	116418112	117420057
ASTN2_chr9_116418112_117420057	0/0	c0011	4020	1	1	0	0	0	0	copy fasta	ASTN2	chr9	116418112	117420057
ASTN2_chr9_116418112_117420057	0/0	c0012	4020	1	1	0	0	0	0	copy fasta	ASTN2	chr9	116418112	117420057
ASTN2_chr9_116418112_117420057	0/0	c0013	4020	1	1	0	0	0	0	copy fasta	ASTN2	chr9	116418112	117420057
ASTN2_chr9_116418112_117420057	0/0	c0014	4020	1	1	0	0	0	0	copy fasta	ASTN2	chr9	116418112	117420057
ASTN2_chr9_116418112_117420057	0/0	c0015	4020	1	0	0	1	0	0	copy fasta	ASTN2	chr9	116418112	117420057
ASTN2_chr9_116418112_117420057	0/0	c0016	4020	1	0	0	0	1	0	copy fasta	ASTN2	chr9	116418112	117420057
ASTN2_chr9_116418112_117420057	0/0	c0017	4020	1	0	1	0	0	0	copy fasta	ASTN2	chr9	116418112	117420057
ASTN2_chr9_116418112_117420057	0/0	c0018	4020	1	0	1	0	0	0	copy fasta	ASTN2	chr9	116418112	117420057
ASTN2_chr9_116418112_117420057	0/0	c0019	4020	1	0	0	0	0	1	copy fasta	ASTN2	chr9	116418112	117420057
ASTN2_chr9_116418112_117420057	0/0	c0020	4020	1	0	0	0	0	1	copy fasta	ASTN2	chr9	116418112	117420057
ASTN2_chr9_116418112_117420057	0/0	c0021	4020	1	1	0	0	0	0	copy fasta	ASTN2	chr9	116418112	117420057
ASTN2_chr9_116418112_117420057	0/0	c0022	4020	1	0	0	1	0	0	copy fasta	ASTN2	chr9	116418112	117420057
ASTN2_chr9_116418112_117420057	0/0	c0023	4020	1	0	0	0	0	1	copy fasta	ASTN2	chr9	116418112	117420057
ASTN2_chr9_116418112_117420057	0/0	c0024	4020	1	0	0	0	0	1	copy fasta	ASTN2	chr9	116418112	117420057
ASTN2_chr9_116418112_117420057	0/0	c0025	4020	1	1	0	0	0	0	copy fasta	ASTN2	chr9	116418112	117420057
ASXL1_chr20_32353331_32444319	1/0	c0001	4626	105	33	28	26	4	13	copy fasta	ASXL1	chr20	32353331	32444319
ASXL1_chr20_32353331_32444319	0/1	c0002	4626	90	12	17	44	6	10	copy fasta	ASXL1	chr20	32353331	32444319
ASXL1_chr20_32353331_32444319	0/0	c0003	4626	21	1	2	18	0	0	copy fasta	ASXL1	chr20	32353331	32444319
ASXL1_chr20_32353331_32444319	0/0	c0004	4626	10	10	0	0	0	0	copy fasta	ASXL1	chr20	32353331	32444319
ASXL1_chr20_32353331_32444319	0/0	c0005	4626	9	9	0	0	0	0	copy fasta	ASXL1	chr20	32353331	32444319
ASXL1_chr20_32353331_32444319	0/0	c0006	4626	7	0	3	3	0	1	copy fasta	ASXL1	chr20	32353331	32444319
ASXL1_chr20_32353331_32444319	0/0	c0007	4626	5	5	0	0	0	0	copy fasta	ASXL1	chr20	32353331	32444319
ASXL1_chr20_32353331_32444319	0/0	c0008	4626	5	4	1	0	0	0	copy fasta	ASXL1	chr20	32353331	32444319
ASXL1_chr20_32353331_32444319	0/0	c0009	4626	5	4	1	0	0	0	copy fasta	ASXL1	chr20	32353331	32444319
ASXL1_chr20_32353331_32444319	0/0	c0010	4626	4	0	2	0	1	1	copy fasta	ASXL1	chr20	32353331	32444319
ASXL1_chr20_32353331_32444319	0/0	c0011	4626	4	4	0	0	0	0	copy fasta	ASXL1	chr20	32353331	32444319
ASXL1_chr20_32353331_32444319	0/0	c0012	4626	2	0	0	2	0	0	copy fasta	ASXL1	chr20	32353331	32444319
ASXL1_chr20_32353331_32444319	0/0	c0013	4626	1	0	0	1	0	0	copy fasta	ASXL1	chr20	32353331	32444319
ASXL1_chr20_32353331_32444319	0/0	c0014	4626	1	0	0	1	0	0	copy fasta	ASXL1	chr20	32353331	32444319
ASXL1_chr20_32353331_32444319	0/0	c0015	4626	1	1	0	0	0	0	copy fasta	ASXL1	chr20	32353331	32444319
ASXL1_chr20_32353331_32444319	0/0	c0016	4626	1	0	0	0	0	1	copy fasta	ASXL1	chr20	32353331	32444319
ASXL1_chr20_32353331_32444319	0/0	c0017	4626	1	0	1	0	0	0	copy fasta	ASXL1	chr20	32353331	32444319
ASXL1_chr20_32353331_32444319	0/0	c0018	4626	1	0	1	0	0	0	copy fasta	ASXL1	chr20	32353331	32444319
ASXL1_chr20_32353331_32444319	0/0	c0019	4626	1	1	0	0	0	0	copy fasta	ASXL1	chr20	32353331	32444319
ASXL1_chr20_32353331_32444319	0/0	c0020	4626	1	0	0	0	1	0	copy fasta	ASXL1	chr20	32353331	32444319
ASXL1_chr20_32353331_32444319	0/0	c0021	4626	1	1	0	0	0	0	copy fasta	ASXL1	chr20	32353331	32444319
ASXL1_chr20_32353331_32444319	0/0	c0022	4626	1	1	0	0	0	0	copy fasta	ASXL1	chr20	32353331	32444319
ASXL1_chr20_32353331_32444319	0/0	c0023	4626	1	1	0	0	0	0	copy fasta	ASXL1	chr20	32353331	32444319
ASXL1_chr20_32353331_32444319	0/0	c0024	4626	1	1	0	0	0	0	copy fasta	ASXL1	chr20	32353331	32444319
ASXL1_chr20_32353331_32444319	0/0	c0025	4626	1	0	0	1	0	0	copy fasta	ASXL1	chr20	32353331	32444319