JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RIN3_chr14_92508781_92693994	0/0	c0056	2955	1	0	0	0	0	1	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	c0057	2955	1	0	0	0	1	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	c0058	2958	1	0	1	0	0	0	copy fasta	RIN3	chr14	92508781	92693994
RIN3_chr14_92508781_92693994	0/0	c0059	2955	1	0	0	0	0	1	copy fasta	RIN3	chr14	92508781	92693994
RING1_chr6_33203500_33217716	0/1	c0001	1221	354	92	59	156	12	34	copy fasta	RING1	chr6	33203500	33217716
RING1_chr6_33203500_33217716	0/0	c0002	1221	68	2	17	33	4	12	copy fasta	RING1	chr6	33203500	33217716
RING1_chr6_33203500_33217716	0/0	c0003	1221	1	0	1	0	0	0	copy fasta	RING1	chr6	33203500	33217716
RING1_chr6_33203500_33217716	0/0	c0004	1221	1	0	1	0	0	0	copy fasta	RING1	chr6	33203500	33217716
RING1_chr6_33203500_33217716	0/0	c0005	1221	1	0	0	1	0	0	copy fasta	RING1	chr6	33203500	33217716
RINL_chr19_38862830_38883275	0/0	c0001	1701	178	35	23	104	3	13	copy fasta	RINL	chr19	38862830	38883275
RINL_chr19_38862830_38883275	1/1	c0002	1701	91	6	25	42	4	12	copy fasta	RINL	chr19	38862830	38883275
RINL_chr19_38862830_38883275	0/0	c0003	1701	78	44	5	20	0	9	copy fasta	RINL	chr19	38862830	38883275
RINL_chr19_38862830_38883275	0/0	c0004	1701	20	1	6	2	2	9	copy fasta	RINL	chr19	38862830	38883275
RINL_chr19_38862830_38883275	0/0	c0005	1701	14	0	5	9	0	0	copy fasta	RINL	chr19	38862830	38883275
RINL_chr19_38862830_38883275	0/0	c0006	1701	12	0	10	0	1	1	copy fasta	RINL	chr19	38862830	38883275
RINL_chr19_38862830_38883275	0/0	c0007	1701	2	2	0	0	0	0	copy fasta	RINL	chr19	38862830	38883275
RINL_chr19_38862830_38883275	0/0	c0008	1701	2	0	2	0	0	0	copy fasta	RINL	chr19	38862830	38883275
RINL_chr19_38862830_38883275	0/0	c0009	1701	2	0	0	0	0	2	copy fasta	RINL	chr19	38862830	38883275
RINL_chr19_38862830_38883275	0/0	c0010	1701	1	0	0	1	0	0	copy fasta	RINL	chr19	38862830	38883275
RINL_chr19_38862830_38883275	0/0	c0011	1701	1	1	0	0	0	0	copy fasta	RINL	chr19	38862830	38883275
RINL_chr19_38862830_38883275	0/0	c0012	1701	1	1	0	0	0	0	copy fasta	RINL	chr19	38862830	38883275
RINL_chr19_38862830_38883275	0/0	c0013	1721	1	0	0	1	0	0	copy fasta	RINL	chr19	38862830	38883275
RINL_chr19_38862830_38883275	0/0	c0014	1701	1	0	0	1	0	0	copy fasta	RINL	chr19	38862830	38883275
RINL_chr19_38862830_38883275	0/0	c0015	1701	1	1	0	0	0	0	copy fasta	RINL	chr19	38862830	38883275
RINL_chr19_38862830_38883275	0/0	c0016	1701	1	1	0	0	0	0	copy fasta	RINL	chr19	38862830	38883275
RINT1_chr7_105527201_105572677	1/1	c0001	2379	279	55	60	121	9	32	copy fasta	RINT1	chr7	105527201	105572677
RINT1_chr7_105527201_105572677	0/0	c0002	2379	28	3	6	4	6	9	copy fasta	RINT1	chr7	105527201	105572677
RINT1_chr7_105527201_105572677	0/0	c0003	2379	21	19	2	0	0	0	copy fasta	RINT1	chr7	105527201	105572677
RINT1_chr7_105527201_105572677	0/0	c0004	2379	17	0	1	16	0	0	copy fasta	RINT1	chr7	105527201	105572677
RINT1_chr7_105527201_105572677	0/0	c0005	2379	7	0	7	0	0	0	copy fasta	RINT1	chr7	105527201	105572677
RINT1_chr7_105527201_105572677	0/0	c0006	2379	5	5	0	0	0	0	copy fasta	RINT1	chr7	105527201	105572677
RINT1_chr7_105527201_105572677	0/0	c0007	2379	2	2	0	0	0	0	copy fasta	RINT1	chr7	105527201	105572677
RINT1_chr7_105527201_105572677	0/0	c0008	2379	2	2	0	0	0	0	copy fasta	RINT1	chr7	105527201	105572677
RINT1_chr7_105527201_105572677	0/0	c0009	2379	2	1	1	0	0	0	copy fasta	RINT1	chr7	105527201	105572677
RINT1_chr7_105527201_105572677	0/0	c0010	2379	1	0	0	0	0	1	copy fasta	RINT1	chr7	105527201	105572677
RINT1_chr7_105527201_105572677	0/0	c0011	2379	1	1	0	0	0	0	copy fasta	RINT1	chr7	105527201	105572677
RINT1_chr7_105527201_105572677	0/0	c0012	2379	1	0	0	0	1	0	copy fasta	RINT1	chr7	105527201	105572677
RINT1_chr7_105527201_105572677	0/0	c0013	2379	1	0	0	1	0	0	copy fasta	RINT1	chr7	105527201	105572677
RINT1_chr7_105527201_105572677	0/0	c0014	2379	1	0	1	0	0	0	copy fasta	RINT1	chr7	105527201	105572677
RIOK1_chr6_7384808_7423037	1/1	c0001	1707	218	62	39	95	5	15	copy fasta	RIOK1	chr6	7384808	7423037
RIOK1_chr6_7384808_7423037	0/0	c0002	1707	136	22	33	60	7	14	copy fasta	RIOK1	chr6	7384808	7423037
RIOK1_chr6_7384808_7423037	0/0	c0003	1707	6	0	0	6	0	0	copy fasta	RIOK1	chr6	7384808	7423037
RIOK1_chr6_7384808_7423037	0/0	c0004	1707	5	5	0	0	0	0	copy fasta	RIOK1	chr6	7384808	7423037
RIOK1_chr6_7384808_7423037	0/0	c0005	1707	3	0	1	0	0	2	copy fasta	RIOK1	chr6	7384808	7423037
RIOK1_chr6_7384808_7423037	0/0	c0006	1707	1	1	0	0	0	0	copy fasta	RIOK1	chr6	7384808	7423037
RIOK1_chr6_7384808_7423037	0/0	c0007	1707	1	0	0	1	0	0	copy fasta	RIOK1	chr6	7384808	7423037
RIOK1_chr6_7384808_7423037	0/0	c0008	1707	1	1	0	0	0	0	copy fasta	RIOK1	chr6	7384808	7423037
RIOK1_chr6_7384808_7423037	0/0	c0009	1707	1	1	0	0	0	0	copy fasta	RIOK1	chr6	7384808	7423037
RIOK1_chr6_7384808_7423037	0/0	c0010	1707	1	0	0	0	0	1	copy fasta	RIOK1	chr6	7384808	7423037
RIOK1_chr6_7384808_7423037	0/0	c0011	1707	1	0	1	0	0	0	copy fasta	RIOK1	chr6	7384808	7423037