JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RIOK2_chr5_97155867_97188247	1/1	c0001	1659	122	24	28	57	4	7	copy fasta	RIOK2	chr5	97155867	97188247
RIOK2_chr5_97155867_97188247	0/0	c0002	1659	118	5	27	59	7	20	copy fasta	RIOK2	chr5	97155867	97188247
RIOK2_chr5_97155867_97188247	0/0	c0003	1659	62	19	7	25	1	10	copy fasta	RIOK2	chr5	97155867	97188247
RIOK2_chr5_97155867_97188247	0/0	c0004	1659	53	19	7	20	2	5	copy fasta	RIOK2	chr5	97155867	97188247
RIOK2_chr5_97155867_97188247	0/0	c0005	1659	11	0	1	10	0	0	copy fasta	RIOK2	chr5	97155867	97188247
RIOK2_chr5_97155867_97188247	0/0	c0006	1659	9	5	2	0	0	2	copy fasta	RIOK2	chr5	97155867	97188247
RIOK2_chr5_97155867_97188247	0/0	c0007	1659	8	8	0	0	0	0	copy fasta	RIOK2	chr5	97155867	97188247
RIOK2_chr5_97155867_97188247	0/0	c0008	1659	6	0	0	6	0	0	copy fasta	RIOK2	chr5	97155867	97188247
RIOK2_chr5_97155867_97188247	0/0	c0009	1659	6	5	1	0	0	0	copy fasta	RIOK2	chr5	97155867	97188247
RIOK2_chr5_97155867_97188247	0/0	c0010	1659	5	5	0	0	0	0	copy fasta	RIOK2	chr5	97155867	97188247
RIOK2_chr5_97155867_97188247	0/0	c0011	1659	3	3	0	0	0	0	copy fasta	RIOK2	chr5	97155867	97188247
RIOK2_chr5_97155867_97188247	0/0	c0012	1659	1	0	0	1	0	0	copy fasta	RIOK2	chr5	97155867	97188247
RIOK2_chr5_97155867_97188247	0/0	c0013	1659	1	0	0	1	0	0	copy fasta	RIOK2	chr5	97155867	97188247
RIOK2_chr5_97155867_97188247	0/0	c0014	1659	1	1	0	0	0	0	copy fasta	RIOK2	chr5	97155867	97188247
RIOK2_chr5_97155867_97188247	0/0	c0015	1659	1	0	1	0	0	0	copy fasta	RIOK2	chr5	97155867	97188247
RIOK2_chr5_97155867_97188247	0/0	c0016	1659	1	0	1	0	0	0	copy fasta	RIOK2	chr5	97155867	97188247
RIOK2_chr5_97155867_97188247	0/0	c0017	1659	1	0	0	1	0	0	copy fasta	RIOK2	chr5	97155867	97188247
RIOK2_chr5_97155867_97188247	0/0	c0018	1659	1	0	1	0	0	0	copy fasta	RIOK2	chr5	97155867	97188247
RIOK3_chr18_23448287_23488140	1/1	c0001	1560	397	88	74	178	14	41	copy fasta	RIOK3	chr18	23448287	23488140
RIOK3_chr18_23448287_23488140	0/0	c0002	1560	1	0	0	0	0	1	copy fasta	RIOK3	chr18	23448287	23488140
RIOK3_chr18_23448287_23488140	0/0	c0003	1560	1	1	0	0	0	0	copy fasta	RIOK3	chr18	23448287	23488140
RIOK3_chr18_23448287_23488140	0/0	c0004	1560	1	1	0	0	0	0	copy fasta	RIOK3	chr18	23448287	23488140
RIOK3_chr18_23448287_23488140	0/0	c0005	1560	1	0	1	0	0	0	copy fasta	RIOK3	chr18	23448287	23488140
RIOK3_chr18_23448287_23488140	0/0	c0006	1560	1	0	1	0	0	0	copy fasta	RIOK3	chr18	23448287	23488140
RIOX1_chr14_73485933_73498394	0/0	c0001	1926	133	34	31	46	3	19	copy fasta	RIOX1	chr14	73485933	73498394
RIOX1_chr14_73485933_73498394	0/0	c0002	1926	92	10	10	61	5	6	copy fasta	RIOX1	chr14	73485933	73498394
RIOX1_chr14_73485933_73498394	0/1	c0003	1926	92	14	19	48	2	8	copy fasta	RIOX1	chr14	73485933	73498394
RIOX1_chr14_73485933_73498394	1/0	c0004	1926	77	12	20	27	4	13	copy fasta	RIOX1	chr14	73485933	73498394
RIOX1_chr14_73485933_73498394	0/0	c0005	1926	11	11	0	0	0	0	copy fasta	RIOX1	chr14	73485933	73498394
RIOX1_chr14_73485933_73498394	0/0	c0006	1926	4	4	0	0	0	0	copy fasta	RIOX1	chr14	73485933	73498394
RIOX1_chr14_73485933_73498394	0/0	c0007	1914	3	3	0	0	0	0	copy fasta	RIOX1	chr14	73485933	73498394
RIOX1_chr14_73485933_73498394	0/0	c0008	1926	2	0	0	2	0	0	copy fasta	RIOX1	chr14	73485933	73498394
RIOX1_chr14_73485933_73498394	0/0	c0009	1926	2	0	0	2	0	0	copy fasta	RIOX1	chr14	73485933	73498394
RIOX1_chr14_73485933_73498394	0/0	c0010	1926	2	0	2	0	0	0	copy fasta	RIOX1	chr14	73485933	73498394
RIOX1_chr14_73485933_73498394	0/0	c0011	1926	1	0	0	1	0	0	copy fasta	RIOX1	chr14	73485933	73498394
RIOX1_chr14_73485933_73498394	0/0	c0012	1926	1	0	0	1	0	0	copy fasta	RIOX1	chr14	73485933	73498394
RIOX1_chr14_73485933_73498394	0/0	c0013	1926	1	0	0	1	0	0	copy fasta	RIOX1	chr14	73485933	73498394
RIOX1_chr14_73485933_73498394	0/0	c0014	1926	1	0	0	1	0	0	copy fasta	RIOX1	chr14	73485933	73498394
RIOX2_chr3_97936818_97977431	0/0	c0001	1398	179	65	35	50	9	20	copy fasta	RIOX2	chr3	97936818	97977431
RIOX2_chr3_97936818_97977431	0/1	c0002	1398	167	21	32	87	8	18	copy fasta	RIOX2	chr3	97936818	97977431
RIOX2_chr3_97936818_97977431	0/0	c0003	1398	10	10	0	0	0	0	copy fasta	RIOX2	chr3	97936818	97977431
RIOX2_chr3_97936818_97977431	1/0	c0004	1398	4	0	0	3	0	0	copy fasta	RIOX2	chr3	97936818	97977431
RIOX2_chr3_97936818_97977431	0/0	c0005	1398	2	1	1	0	0	0	copy fasta	RIOX2	chr3	97936818	97977431
RIOX2_chr3_97936818_97977431	0/0	c0006	1398	2	0	2	0	0	0	copy fasta	RIOX2	chr3	97936818	97977431
RIOX2_chr3_97936818_97977431	0/0	c0007	1398	1	0	1	0	0	0	copy fasta	RIOX2	chr3	97936818	97977431
RIOX2_chr3_97936818_97977431	0/0	c0008	1398	1	0	0	1	0	0	copy fasta	RIOX2	chr3	97936818	97977431
RIOX2_chr3_97936818_97977431	0/0	c0009	1398	1	1	0	0	0	0	copy fasta	RIOX2	chr3	97936818	97977431
RIOX2_chr3_97936818_97977431	0/0	c0010	1398	1	0	0	1	0	0	copy fasta	RIOX2	chr3	97936818	97977431
RIOX2_chr3_97936818_97977431	0/0	c0011	1398	1	0	0	0	1	0	copy fasta	RIOX2	chr3	97936818	97977431
RIOX2_chr3_97936818_97977431	0/0	c0012	1398	1	0	1	0	0	0	copy fasta	RIOX2	chr3	97936818	97977431