JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RIPK1_chr6_3063494_3120187	0/1	c0001	2016	264	59	62	92	14	36	copy fasta	RIPK1	chr6	3063494	3120187
RIPK1_chr6_3063494_3120187	1/0	c0002	2016	70	24	3	38	0	4	copy fasta	RIPK1	chr6	3063494	3120187
RIPK1_chr6_3063494_3120187	0/0	c0003	2016	2	2	0	0	0	0	copy fasta	RIPK1	chr6	3063494	3120187
RIPK1_chr6_3063494_3120187	0/0	c0004	2016	1	1	0	0	0	0	copy fasta	RIPK1	chr6	3063494	3120187
RIPK1_chr6_3063494_3120187	0/0	c0005	2016	1	0	1	0	0	0	copy fasta	RIPK1	chr6	3063494	3120187
RIPK1_chr6_3063494_3120187	0/0	c0006	2016	1	0	0	1	0	0	copy fasta	RIPK1	chr6	3063494	3120187
RIPK1_chr6_3063494_3120187	0/0	c0007	2016	1	0	0	1	0	0	copy fasta	RIPK1	chr6	3063494	3120187
RIPK2_chr8_89752816_89796064	1/1	c0001	1623	251	45	57	103	11	33	copy fasta	RIPK2	chr8	89752816	89796064
RIPK2_chr8_89752816_89796064	0/0	c0002	1623	68	12	1	44	0	11	copy fasta	RIPK2	chr8	89752816	89796064
RIPK2_chr8_89752816_89796064	0/0	c0003	1623	28	15	1	12	0	0	copy fasta	RIPK2	chr8	89752816	89796064
RIPK2_chr8_89752816_89796064	0/0	c0004	1623	15	5	3	6	1	0	copy fasta	RIPK2	chr8	89752816	89796064
RIPK2_chr8_89752816_89796064	0/0	c0005	1623	7	6	1	0	0	0	copy fasta	RIPK2	chr8	89752816	89796064
RIPK2_chr8_89752816_89796064	0/0	c0006	1623	5	5	0	0	0	0	copy fasta	RIPK2	chr8	89752816	89796064
RIPK2_chr8_89752816_89796064	0/0	c0007	1623	2	1	1	0	0	0	copy fasta	RIPK2	chr8	89752816	89796064
RIPK2_chr8_89752816_89796064	0/0	c0008	1623	1	1	0	0	0	0	copy fasta	RIPK2	chr8	89752816	89796064
RIPK2_chr8_89752816_89796064	0/0	c0009	1623	1	0	0	1	0	0	copy fasta	RIPK2	chr8	89752816	89796064
RIPK2_chr8_89752816_89796064	0/0	c0010	1623	1	0	0	1	0	0	copy fasta	RIPK2	chr8	89752816	89796064
RIPK2_chr8_89752816_89796064	0/0	c0011	1623	1	0	0	1	0	0	copy fasta	RIPK2	chr8	89752816	89796064
RIPK3_chr14_24331025_24344991	1/0	c0001	1557	338	56	59	172	12	38	copy fasta	RIPK3	chr14	24331025	24344991
RIPK3_chr14_24331025_24344991	0/0	c0002	1557	49	22	3	21	0	3	copy fasta	RIPK3	chr14	24331025	24344991
RIPK3_chr14_24331025_24344991	0/1	c0003	1557	18	5	6	0	2	4	copy fasta	RIPK3	chr14	24331025	24344991
RIPK3_chr14_24331025_24344991	0/0	c0004	1557	5	5	0	0	0	0	copy fasta	RIPK3	chr14	24331025	24344991
RIPK3_chr14_24331025_24344991	0/0	c0005	1557	5	0	0	5	0	0	copy fasta	RIPK3	chr14	24331025	24344991
RIPK3_chr14_24331025_24344991	0/0	c0006	1557	2	0	0	1	0	1	copy fasta	RIPK3	chr14	24331025	24344991
RIPK3_chr14_24331025_24344991	0/0	c0007	1557	2	2	0	0	0	0	copy fasta	RIPK3	chr14	24331025	24344991
RIPK3_chr14_24331025_24344991	0/0	c0008	1557	1	0	0	1	0	0	copy fasta	RIPK3	chr14	24331025	24344991
RIPK3_chr14_24331025_24344991	0/0	c0009	1557	1	1	0	0	0	0	copy fasta	RIPK3	chr14	24331025	24344991
RIPK3_chr14_24331025_24344991	0/0	c0010	1557	1	0	0	1	0	0	copy fasta	RIPK3	chr14	24331025	24344991
RIPK3_chr14_24331025_24344991	0/0	c0011	1557	1	0	1	0	0	0	copy fasta	RIPK3	chr14	24331025	24344991
RIPK3_chr14_24331025_24344991	0/0	c0012	1466	1	0	0	0	0	1	copy fasta	RIPK3	chr14	24331025	24344991
RIPK3_chr14_24331025_24344991	0/0	c0013	1557	1	1	0	0	0	0	copy fasta	RIPK3	chr14	24331025	24344991
RIPK3_chr14_24331025_24344991	0/0	c0014	1557	1	0	0	1	0	0	copy fasta	RIPK3	chr14	24331025	24344991
RIPK3_chr14_24331025_24344991	0/0	c0015	1557	1	0	1	0	0	0	copy fasta	RIPK3	chr14	24331025	24344991
RIPK3_chr14_24331025_24344991	0/0	c0016	1557	1	0	0	0	0	1	copy fasta	RIPK3	chr14	24331025	24344991
RIPK4_chr21_41734373_41772052	0/1	c0001	2355	146	9	33	87	4	12	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	c0002	2355	112	37	19	46	5	5	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	c0003	2355	36	3	1	31	0	1	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	c0004	2355	24	0	9	2	3	10	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	1/0	c0005	2355	21	0	0	15	0	5	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	c0006	2355	17	12	2	0	1	2	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	c0007	2355	8	0	0	8	0	0	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	c0008	2355	7	0	4	0	2	1	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	c0009	2355	5	5	0	0	0	0	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	c0010	2355	4	1	3	0	0	0	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	c0011	2355	4	0	0	4	0	0	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	c0012	2355	4	3	1	0	0	0	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	c0013	2355	4	2	2	0	0	0	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	c0014	2355	4	0	1	0	1	2	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	c0015	2355	3	2	1	0	0	0	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	c0016	2355	3	3	0	0	0	0	copy fasta	RIPK4	chr21	41734373	41772052