JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RIPK4_chr21_41734373_41772052	0/0	c0017	2355	3	1	1	1	0	0	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	c0018	2355	3	2	1	0	0	0	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	c0019	2355	3	3	0	0	0	0	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	c0020	2355	2	0	0	0	0	2	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	c0021	2355	2	0	0	0	0	2	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	c0022	2355	2	2	0	0	0	0	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	c0023	2355	2	1	1	0	0	0	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	c0024	2355	2	0	0	0	0	2	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	c0025	2355	2	0	0	0	1	1	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	c0026	2355	2	0	2	0	0	0	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	c0027	2355	2	0	0	0	0	2	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	c0028	2355	1	0	0	0	1	0	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	c0029	2355	1	0	1	0	0	0	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	c0030	2355	1	1	0	0	0	0	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	c0031	2355	1	1	0	0	0	0	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	c0032	2355	1	0	0	0	0	1	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	c0033	2355	1	1	0	0	0	0	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	c0034	2355	1	1	0	0	0	0	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	c0035	2355	1	1	0	0	0	0	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	c0036	2355	1	1	0	0	0	0	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	c0037	2355	1	1	0	0	0	0	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	c0038	2355	1	1	0	0	0	0	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	c0039	2355	1	0	0	1	0	0	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	c0040	2355	1	0	0	1	0	0	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	c0041	2355	1	0	0	1	0	0	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	c0042	2355	1	0	0	1	0	0	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	c0043	2355	1	0	0	1	0	0	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	c0044	2355	1	0	0	1	0	0	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	c0045	2355	1	0	0	1	0	0	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	c0046	2355	1	0	0	1	0	0	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	c0047	2355	1	1	0	0	0	0	copy fasta	RIPK4	chr21	41734373	41772052
RIPK4_chr21_41734373_41772052	0/0	c0048	2355	1	1	0	0	0	0	copy fasta	RIPK4	chr21	41734373	41772052
RIPOR1_chr16_67523829_67551786	1/1	c0001	3660	178	72	43	35	8	18	copy fasta	RIPOR1	chr16	67523829	67551786
RIPOR1_chr16_67523829_67551786	0/0	c0002	3660	12	7	1	3	0	1	copy fasta	RIPOR1	chr16	67523829	67551786
RIPOR1_chr16_67523829_67551786	0/0	c0003	3660	10	5	0	0	0	5	copy fasta	RIPOR1	chr16	67523829	67551786
RIPOR1_chr16_67523829_67551786	0/0	c0004	3660	3	2	1	0	0	0	copy fasta	RIPOR1	chr16	67523829	67551786
RIPOR1_chr16_67523829_67551786	0/0	c0005	3660	3	3	0	0	0	0	copy fasta	RIPOR1	chr16	67523829	67551786
RIPOR1_chr16_67523829_67551786	0/0	c0006	3660	2	1	1	0	0	0	copy fasta	RIPOR1	chr16	67523829	67551786
RIPOR1_chr16_67523829_67551786	0/0	c0007	3660	2	0	0	2	0	0	copy fasta	RIPOR1	chr16	67523829	67551786
RIPOR1_chr16_67523829_67551786	0/0	c0008	3660	2	0	0	2	0	0	copy fasta	RIPOR1	chr16	67523829	67551786
RIPOR1_chr16_67523829_67551786	0/0	c0009	3660	1	1	0	0	0	0	copy fasta	RIPOR1	chr16	67523829	67551786
RIPOR1_chr16_67523829_67551786	0/0	c0010	3660	1	0	0	1	0	0	copy fasta	RIPOR1	chr16	67523829	67551786
RIPOR1_chr16_67523829_67551786	0/0	c0011	3660	1	0	1	0	0	0	copy fasta	RIPOR1	chr16	67523829	67551786
RIPOR1_chr16_67523829_67551786	0/0	c0012	3660	1	0	1	0	0	0	copy fasta	RIPOR1	chr16	67523829	67551786
RIPOR1_chr16_67523829_67551786	0/0	c0013	3660	1	0	0	1	0	0	copy fasta	RIPOR1	chr16	67523829	67551786
RIPOR1_chr16_67523829_67551786	0/0	c0014	3660	1	0	0	0	0	1	copy fasta	RIPOR1	chr16	67523829	67551786
RIPOR1_chr16_67523829_67551786	0/0	c0015	3660	1	0	1	0	0	0	copy fasta	RIPOR1	chr16	67523829	67551786
RIPOR1_chr16_67523829_67551786	0/0	c0016	3660	1	1	0	0	0	0	copy fasta	RIPOR1	chr16	67523829	67551786
RIPOR1_chr16_67523829_67551786	0/0	c0017	3660	1	0	0	0	0	1	copy fasta	RIPOR1	chr16	67523829	67551786
RIPOR1_chr16_67523829_67551786	0/0	c0018	3660	1	0	1	0	0	0	copy fasta	RIPOR1	chr16	67523829	67551786