JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RIPOR1_chr16_67523829_67551786	0/0	c0019	3660	1	0	0	1	0	0	copy fasta	RIPOR1	chr16	67523829	67551786
RIPOR1_chr16_67523829_67551786	0/0	c0020	3660	1	0	0	1	0	0	copy fasta	RIPOR1	chr16	67523829	67551786
RIPOR2_chr6_24799284_24940960	0/0	c0001	3144	120	7	20	73	5	15	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	c0002	3144	51	13	11	23	1	3	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/1	c0003	3144	49	3	10	20	1	14	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	1/0	c0004	3144	40	18	10	3	2	6	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	c0005	3144	11	11	0	0	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	c0006	3144	7	7	0	0	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	c0007	3144	6	0	3	2	1	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	c0008	3144	4	0	1	3	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	c0009	3144	4	2	2	0	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	c0010	3144	4	4	0	0	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	c0011	3144	3	3	0	0	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	c0012	3144	2	2	0	0	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	c0013	3144	2	0	0	2	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	c0014	3144	2	2	0	0	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	c0015	3144	2	0	0	2	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	c0016	3144	2	2	0	0	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	c0017	3144	2	2	0	0	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	c0018	3144	1	0	0	1	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	c0019	3144	1	0	0	1	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	c0020	3144	1	0	0	0	0	1	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	c0021	3144	1	1	0	0	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	c0022	3144	1	1	0	0	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	c0023	3144	1	1	0	0	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	c0024	3144	1	0	0	1	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	c0025	3144	1	1	0	0	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	c0026	3144	1	1	0	0	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	c0027	3144	1	0	0	1	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	c0028	3144	1	0	0	1	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	c0029	3144	1	0	0	0	0	1	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	c0030	3144	1	0	0	1	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	c0031	3144	1	1	0	0	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	c0032	3144	1	1	0	0	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	c0033	3144	1	1	0	0	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR2_chr6_24799284_24940960	0/0	c0034	3224	1	0	1	0	0	0	copy fasta	RIPOR2	chr6	24799284	24940960
RIPOR3_chr20_50581108_50696542	0/0	c0001	2853	149	34	30	65	3	17	copy fasta	RIPOR3	chr20	50581108	50696542
RIPOR3_chr20_50581108_50696542	1/1	c0002	2853	74	11	20	28	5	8	copy fasta	RIPOR3	chr20	50581108	50696542
RIPOR3_chr20_50581108_50696542	0/0	c0003	2853	8	1	3	3	0	1	copy fasta	RIPOR3	chr20	50581108	50696542
RIPOR3_chr20_50581108_50696542	0/0	c0004	2853	4	3	1	0	0	0	copy fasta	RIPOR3	chr20	50581108	50696542
RIPOR3_chr20_50581108_50696542	0/0	c0005	2853	4	4	0	0	0	0	copy fasta	RIPOR3	chr20	50581108	50696542
RIPOR3_chr20_50581108_50696542	0/0	c0006	2853	3	0	2	0	0	1	copy fasta	RIPOR3	chr20	50581108	50696542
RIPOR3_chr20_50581108_50696542	0/0	c0007	2853	3	3	0	0	0	0	copy fasta	RIPOR3	chr20	50581108	50696542
RIPOR3_chr20_50581108_50696542	0/0	c0008	2853	3	0	0	3	0	0	copy fasta	RIPOR3	chr20	50581108	50696542
RIPOR3_chr20_50581108_50696542	0/0	c0009	2853	2	2	0	0	0	0	copy fasta	RIPOR3	chr20	50581108	50696542
RIPOR3_chr20_50581108_50696542	0/0	c0010	2853	2	2	0	0	0	0	copy fasta	RIPOR3	chr20	50581108	50696542
RIPOR3_chr20_50581108_50696542	0/0	c0011	2853	2	1	1	0	0	0	copy fasta	RIPOR3	chr20	50581108	50696542
RIPOR3_chr20_50581108_50696542	0/0	c0012	2853	2	2	0	0	0	0	copy fasta	RIPOR3	chr20	50581108	50696542
RIPOR3_chr20_50581108_50696542	0/0	c0013	2853	2	0	0	2	0	0	copy fasta	RIPOR3	chr20	50581108	50696542
RIPOR3_chr20_50581108_50696542	0/0	c0014	2853	1	0	0	1	0	0	copy fasta	RIPOR3	chr20	50581108	50696542