JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RIPOR3_chr20_50581108_50696542	0/0	c0015	2853	1	1	0	0	0	0	copy fasta	RIPOR3	chr20	50581108	50696542
RIPOR3_chr20_50581108_50696542	0/0	c0016	2853	1	1	0	0	0	0	copy fasta	RIPOR3	chr20	50581108	50696542
RIPOR3_chr20_50581108_50696542	0/0	c0017	2853	1	0	0	1	0	0	copy fasta	RIPOR3	chr20	50581108	50696542
RIPOR3_chr20_50581108_50696542	0/0	c0018	2853	1	0	1	0	0	0	copy fasta	RIPOR3	chr20	50581108	50696542
RIPOR3_chr20_50581108_50696542	0/0	c0019	2853	1	0	0	1	0	0	copy fasta	RIPOR3	chr20	50581108	50696542
RIPOR3_chr20_50581108_50696542	0/0	c0020	2853	1	1	0	0	0	0	copy fasta	RIPOR3	chr20	50581108	50696542
RIPOR3_chr20_50581108_50696542	0/0	c0021	2853	1	0	1	0	0	0	copy fasta	RIPOR3	chr20	50581108	50696542
RIPOR3_chr20_50581108_50696542	0/0	c0022	2853	1	0	0	1	0	0	copy fasta	RIPOR3	chr20	50581108	50696542
RIPOR3_chr20_50581108_50696542	0/0	c0023	2853	1	0	0	1	0	0	copy fasta	RIPOR3	chr20	50581108	50696542
RIPOR3_chr20_50581108_50696542	0/0	c0024	2853	1	1	0	0	0	0	copy fasta	RIPOR3	chr20	50581108	50696542
RIPOR3_chr20_50581108_50696542	0/0	c0025	2853	1	0	0	0	0	1	copy fasta	RIPOR3	chr20	50581108	50696542
RIPOR3_chr20_50581108_50696542	0/0	c0026	2853	1	0	0	0	0	1	copy fasta	RIPOR3	chr20	50581108	50696542
RIPOR3_chr20_50581108_50696542	0/0	c0027	2853	1	0	1	0	0	0	copy fasta	RIPOR3	chr20	50581108	50696542
RIPOR3_chr20_50581108_50696542	0/0	c0028	2853	1	1	0	0	0	0	copy fasta	RIPOR3	chr20	50581108	50696542
RIPOR3_chr20_50581108_50696542	0/0	c0029	2853	1	1	0	0	0	0	copy fasta	RIPOR3	chr20	50581108	50696542
RIPOR3_chr20_50581108_50696542	0/0	c0030	2853	1	0	0	1	0	0	copy fasta	RIPOR3	chr20	50581108	50696542
RIPOR3_chr20_50581108_50696542	0/0	c0031	2853	1	0	0	1	0	0	copy fasta	RIPOR3	chr20	50581108	50696542
RIPOR3_chr20_50581108_50696542	0/0	c0032	2853	1	0	0	1	0	0	copy fasta	RIPOR3	chr20	50581108	50696542
RIPOR3_chr20_50581108_50696542	0/0	c0033	2853	1	1	0	0	0	0	copy fasta	RIPOR3	chr20	50581108	50696542
RIPOR3_chr20_50581108_50696542	0/0	c0034	2853	1	0	0	0	0	1	copy fasta	RIPOR3	chr20	50581108	50696542
RIPOR3_chr20_50581108_50696542	0/0	c0035	2853	1	0	0	1	0	0	copy fasta	RIPOR3	chr20	50581108	50696542
RIPPLY1_chrX_106895063_106908341	1/1	c0001	456	296	70	50	138	9	27	copy fasta	RIPPLY1	chrX	106895063	106908341
RIPPLY1_chrX_106895063_106908341	0/0	c0002	454	1	0	0	1	0	0	copy fasta	RIPPLY1	chrX	106895063	106908341
RIPPLY2_chr6_83848360_83862515	1/1	c0001	387	252	29	57	113	11	40	copy fasta	RIPPLY2	chr6	83848360	83862515
RIPPLY2_chr6_83848360_83862515	0/0	c0002	387	142	67	23	47	3	2	copy fasta	RIPPLY2	chr6	83848360	83862515
RIPPLY2_chr6_83848360_83862515	0/0	c0003	387	4	0	0	4	0	0	copy fasta	RIPPLY2	chr6	83848360	83862515
RIPPLY3_chr21_37001702_37024662	1/1	c0001	573	425	93	81	197	14	38	copy fasta	RIPPLY3	chr21	37001702	37024662
RIPPLY3_chr21_37001702_37024662	0/0	c0002	573	4	3	1	0	0	0	copy fasta	RIPPLY3	chr21	37001702	37024662
RIPPLY3_chr21_37001702_37024662	0/0	c0003	573	1	0	0	1	0	0	copy fasta	RIPPLY3	chr21	37001702	37024662
RIPPLY3_chr21_37001702_37024662	0/0	c0004	573	1	0	0	0	0	1	copy fasta	RIPPLY3	chr21	37001702	37024662
RIPPLY3_chr21_37001702_37024662	0/0	c0005	596	1	1	0	0	0	0	copy fasta	RIPPLY3	chr21	37001702	37024662
RIPPLY3_chr21_37001702_37024662	0/0	c0006	573	1	1	0	0	0	0	copy fasta	RIPPLY3	chr21	37001702	37024662
RIPPLY3_chr21_37001702_37024662	0/0	c0007	573	1	0	0	0	0	1	copy fasta	RIPPLY3	chr21	37001702	37024662
RIT1_chr1_155892808_155916349	1/1	c0001	660	337	92	61	126	16	40	copy fasta	RIT1	chr1	155892808	155916349
RIT1_chr1_155892808_155916349	0/0	c0002	660	5	4	1	0	0	0	copy fasta	RIT1	chr1	155892808	155916349
RIT2_chr18_42738227_43120685	0/1	c0001	654	165	59	29	71	0	5	copy fasta	RIT2	chr18	42738227	43120685
RIT2_chr18_42738227_43120685	1/0	c0002	654	75	15	17	21	6	15	copy fasta	RIT2	chr18	42738227	43120685
RITA1_chr12_113180721_113197368	1/1	c0001	810	366	69	66	169	15	45	copy fasta	RITA1	chr12	113180721	113197368
RITA1_chr12_113180721_113197368	0/0	c0002	810	8	8	0	0	0	0	copy fasta	RITA1	chr12	113180721	113197368
RITA1_chr12_113180721_113197368	0/0	c0003	810	4	4	0	0	0	0	copy fasta	RITA1	chr12	113180721	113197368
RITA1_chr12_113180721_113197368	0/0	c0004	810	3	1	1	0	1	0	copy fasta	RITA1	chr12	113180721	113197368
RITA1_chr12_113180721_113197368	0/0	c0005	810	1	0	0	0	0	1	copy fasta	RITA1	chr12	113180721	113197368
RITA1_chr12_113180721_113197368	0/0	c0006	810	1	1	0	0	0	0	copy fasta	RITA1	chr12	113180721	113197368
RITA1_chr12_113180721_113197368	0/0	c0007	810	1	1	0	0	0	0	copy fasta	RITA1	chr12	113180721	113197368
RITA1_chr12_113180721_113197368	0/0	c0008	810	1	0	0	1	0	0	copy fasta	RITA1	chr12	113180721	113197368
RITA1_chr12_113180721_113197368	0/0	c0009	810	1	0	1	0	0	0	copy fasta	RITA1	chr12	113180721	113197368
RLBP1_chr15_89204869_89226579	1/1	c0001	954	400	91	65	181	16	45	copy fasta	RLBP1	chr15	89204869	89226579
RLBP1_chr15_89204869_89226579	0/0	c0002	954	6	6	0	0	0	0	copy fasta	RLBP1	chr15	89204869	89226579
RLBP1_chr15_89204869_89226579	0/0	c0003	954	3	0	0	3	0	0	copy fasta	RLBP1	chr15	89204869	89226579
RLBP1_chr15_89204869_89226579	0/0	c0004	954	2	1	1	0	0	0	copy fasta	RLBP1	chr15	89204869	89226579