JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RLN2_chr9_5294864_5309716	1/1	c0001	558	430	86	68	218	16	40	copy fasta	RLN2	chr9	5294864	5309716
RLN2_chr9_5294864_5309716	0/0	c0002	558	6	6	0	0	0	0	copy fasta	RLN2	chr9	5294864	5309716
RLN2_chr9_5294864_5309716	0/0	c0003	347	4	2	1	1	0	0	copy fasta	RLN2	chr9	5294864	5309716
RLN2_chr9_5294864_5309716	0/0	c0004	558	2	0	0	2	0	0	copy fasta	RLN2	chr9	5294864	5309716
RLN2_chr9_5294864_5309716	0/0	c0005	558	1	0	1	0	0	0	copy fasta	RLN2	chr9	5294864	5309716
RLN2_chr9_5294864_5309716	0/0	c0006	558	1	0	0	0	0	1	copy fasta	RLN2	chr9	5294864	5309716
RLN2_chr9_5294864_5309716	0/0	c0007	558	1	0	0	0	0	1	copy fasta	RLN2	chr9	5294864	5309716
RLN2_chr9_5294864_5309716	0/0	c0008	558	1	0	0	1	0	0	copy fasta	RLN2	chr9	5294864	5309716
RLN2_chr9_5294864_5309716	0/0	c0009	558	1	0	0	1	0	0	copy fasta	RLN2	chr9	5294864	5309716
RLN2_chr9_5294864_5309716	0/0	c0010	558	1	0	1	0	0	0	copy fasta	RLN2	chr9	5294864	5309716
RLN2_chr9_5294864_5309716	0/0	c0011	558	1	0	1	0	0	0	copy fasta	RLN2	chr9	5294864	5309716
RLN2_chr9_5294864_5309716	0/0	c0012	558	1	1	0	0	0	0	copy fasta	RLN2	chr9	5294864	5309716
RLN2_chr9_5294864_5309716	0/0	c0013	558	1	1	0	0	0	0	copy fasta	RLN2	chr9	5294864	5309716
RLN2_chr9_5294864_5309716	0/0	c0014	558	1	0	0	1	0	0	copy fasta	RLN2	chr9	5294864	5309716
RLN3_chr19_14023148_14036551	1/1	c0001	429	329	69	67	145	15	31	copy fasta	RLN3	chr19	14023148	14036551
RLN3_chr19_14023148_14036551	0/0	c0002	429	75	7	7	49	1	11	copy fasta	RLN3	chr19	14023148	14036551
RLN3_chr19_14023148_14036551	0/0	c0003	429	14	13	1	0	0	0	copy fasta	RLN3	chr19	14023148	14036551
RLN3_chr19_14023148_14036551	0/0	c0004	429	3	0	0	0	0	3	copy fasta	RLN3	chr19	14023148	14036551
RLN3_chr19_14023148_14036551	0/0	c0005	429	1	0	0	0	0	1	copy fasta	RLN3	chr19	14023148	14036551
RLN3_chr19_14023148_14036551	0/0	c0006	429	1	1	0	0	0	0	copy fasta	RLN3	chr19	14023148	14036551
RLN3_chr19_14023148_14036551	0/0	c0007	429	1	0	0	1	0	0	copy fasta	RLN3	chr19	14023148	14036551
RLN3_chr19_14023148_14036551	0/0	c0008	429	1	0	0	1	0	0	copy fasta	RLN3	chr19	14023148	14036551
RLN3_chr19_14023148_14036551	0/0	c0009	429	1	1	0	0	0	0	copy fasta	RLN3	chr19	14023148	14036551
RLN3_chr19_14023148_14036551	0/0	c0010	429	1	0	1	0	0	0	copy fasta	RLN3	chr19	14023148	14036551
RLN3_chr19_14023148_14036551	0/0	c0011	429	1	1	0	0	0	0	copy fasta	RLN3	chr19	14023148	14036551
RMC1_chr18_23498511_23536822	0/0	c0001	1974	293	45	46	171	7	24	copy fasta	RMC1	chr18	23498511	23536822
RMC1_chr18_23498511_23536822	0/0	c0002	1974	48	22	6	10	0	10	copy fasta	RMC1	chr18	23498511	23536822
RMC1_chr18_23498511_23536822	1/0	c0003	1974	48	7	15	15	4	6	copy fasta	RMC1	chr18	23498511	23536822
RMC1_chr18_23498511_23536822	0/0	c0004	1974	15	13	2	0	0	0	copy fasta	RMC1	chr18	23498511	23536822
RMC1_chr18_23498511_23536822	0/0	c0005	1974	3	3	0	0	0	0	copy fasta	RMC1	chr18	23498511	23536822
RMC1_chr18_23498511_23536822	0/1	c0006	1974	1	0	0	0	0	0	copy fasta	RMC1	chr18	23498511	23536822
RMC1_chr18_23498511_23536822	0/0	c0007	1974	1	0	0	0	1	0	copy fasta	RMC1	chr18	23498511	23536822
RMC1_chr18_23498511_23536822	0/0	c0008	1974	1	0	1	0	0	0	copy fasta	RMC1	chr18	23498511	23536822
RMDN1_chr8_86467349_86513686	1/1	c0001	945	176	55	28	68	5	18	copy fasta	RMDN1	chr8	86467349	86513686
RMDN1_chr8_86467349_86513686	0/0	c0002	945	135	16	23	75	6	15	copy fasta	RMDN1	chr8	86467349	86513686
RMDN1_chr8_86467349_86513686	0/0	c0003	945	53	20	11	15	1	6	copy fasta	RMDN1	chr8	86467349	86513686
RMDN1_chr8_86467349_86513686	0/0	c0004	945	1	0	0	0	0	1	copy fasta	RMDN1	chr8	86467349	86513686
RMDN1_chr8_86467349_86513686	0/0	c0005	945	1	0	0	1	0	0	copy fasta	RMDN1	chr8	86467349	86513686
RMDN1_chr8_86467349_86513686	0/0	c0006	945	1	1	0	0	0	0	copy fasta	RMDN1	chr8	86467349	86513686
RMDN1_chr8_86467349_86513686	0/0	c0007	945	1	0	0	1	0	0	copy fasta	RMDN1	chr8	86467349	86513686
RMDN2_chr2_37920287_38022744	1/1	c0001	1233	287	70	68	110	14	23	copy fasta	RMDN2	chr2	37920287	38022744
RMDN2_chr2_37920287_38022744	0/0	c0002	1233	11	0	0	10	0	1	copy fasta	RMDN2	chr2	37920287	38022744
RMDN2_chr2_37920287_38022744	0/0	c0003	1233	11	0	0	11	0	0	copy fasta	RMDN2	chr2	37920287	38022744
RMDN2_chr2_37920287_38022744	0/0	c0004	1233	5	5	0	0	0	0	copy fasta	RMDN2	chr2	37920287	38022744
RMDN2_chr2_37920287_38022744	0/0	c0005	1233	3	3	0	0	0	0	copy fasta	RMDN2	chr2	37920287	38022744
RMDN2_chr2_37920287_38022744	0/0	c0006	1233	3	3	0	0	0	0	copy fasta	RMDN2	chr2	37920287	38022744
RMDN2_chr2_37920287_38022744	0/0	c0007	1233	3	3	0	0	0	0	copy fasta	RMDN2	chr2	37920287	38022744
RMDN2_chr2_37920287_38022744	0/0	c0008	1233	1	1	0	0	0	0	copy fasta	RMDN2	chr2	37920287	38022744
RMDN2_chr2_37920287_38022744	0/0	c0009	1233	1	0	0	0	1	0	copy fasta	RMDN2	chr2	37920287	38022744
RMDN2_chr2_37920287_38022744	0/0	c0010	1233	1	1	0	0	0	0	copy fasta	RMDN2	chr2	37920287	38022744