JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RMDN2_chr2_37920287_38022744	0/0	c0011	1233	1	0	0	1	0	0	copy fasta	RMDN2	chr2	37920287	38022744
RMDN2_chr2_37920287_38022744	0/0	c0012	1233	1	0	0	0	1	0	copy fasta	RMDN2	chr2	37920287	38022744
RMDN3_chr15_40730887_40760254	1/1	c0001	1413	386	74	66	183	14	47	copy fasta	RMDN3	chr15	40730887	40760254
RMDN3_chr15_40730887_40760254	0/0	c0002	1413	11	11	0	0	0	0	copy fasta	RMDN3	chr15	40730887	40760254
RMDN3_chr15_40730887_40760254	0/0	c0003	1413	3	0	2	0	0	1	copy fasta	RMDN3	chr15	40730887	40760254
RMDN3_chr15_40730887_40760254	0/0	c0004	1413	1	0	0	1	0	0	copy fasta	RMDN3	chr15	40730887	40760254
RMDN3_chr15_40730887_40760254	0/0	c0005	1413	1	0	0	1	0	0	copy fasta	RMDN3	chr15	40730887	40760254
RMDN3_chr15_40730887_40760254	0/0	c0006	1413	1	0	0	1	0	0	copy fasta	RMDN3	chr15	40730887	40760254
RMDN3_chr15_40730887_40760254	0/0	c0007	1413	1	1	0	0	0	0	copy fasta	RMDN3	chr15	40730887	40760254
RMI1_chr9_83975805_84009074	0/1	c0001	1878	270	56	33	141	11	28	copy fasta	RMI1	chr9	83975805	84009074
RMI1_chr9_83975805_84009074	1/0	c0002	1878	121	32	25	44	3	16	copy fasta	RMI1	chr9	83975805	84009074
RMI1_chr9_83975805_84009074	0/0	c0003	1878	3	3	0	0	0	0	copy fasta	RMI1	chr9	83975805	84009074
RMI1_chr9_83975805_84009074	0/0	c0004	1878	1	1	0	0	0	0	copy fasta	RMI1	chr9	83975805	84009074
RMI1_chr9_83975805_84009074	0/0	c0005	1878	1	0	0	1	0	0	copy fasta	RMI1	chr9	83975805	84009074
RMI1_chr9_83975805_84009074	0/0	c0006	1878	1	1	0	0	0	0	copy fasta	RMI1	chr9	83975805	84009074
RMI1_chr9_83975805_84009074	0/0	c0007	1878	1	1	0	0	0	0	copy fasta	RMI1	chr9	83975805	84009074
RMI1_chr9_83975805_84009074	0/0	c0008	1878	1	1	0	0	0	0	copy fasta	RMI1	chr9	83975805	84009074
RMI1_chr9_83975805_84009074	0/0	c0009	1878	1	1	0	0	0	0	copy fasta	RMI1	chr9	83975805	84009074
RMI1_chr9_83975805_84009074	0/0	c0010	1878	1	0	0	0	0	1	copy fasta	RMI1	chr9	83975805	84009074
RMI1_chr9_83975805_84009074	0/0	c0011	1878	1	0	0	0	0	1	copy fasta	RMI1	chr9	83975805	84009074
RMI1_chr9_83975805_84009074	0/0	c0012	1878	1	0	0	0	0	1	copy fasta	RMI1	chr9	83975805	84009074
RMI1_chr9_83975805_84009074	0/0	c0013	1878	1	0	0	0	0	1	copy fasta	RMI1	chr9	83975805	84009074
RMI2_chr16_11340459_11356760	1/1	c0001	444	358	67	63	186	9	31	copy fasta	RMI2	chr16	11340459	11356760
RMI2_chr16_11340459_11356760	0/0	c0002	444	48	14	16	0	7	11	copy fasta	RMI2	chr16	11340459	11356760
RMI2_chr16_11340459_11356760	0/0	c0003	444	10	9	1	0	0	0	copy fasta	RMI2	chr16	11340459	11356760
RMI2_chr16_11340459_11356760	0/0	c0004	444	3	3	0	0	0	0	copy fasta	RMI2	chr16	11340459	11356760
RMI2_chr16_11340459_11356760	0/0	c0005	444	3	0	0	3	0	0	copy fasta	RMI2	chr16	11340459	11356760
RMI2_chr16_11340459_11356760	0/0	c0006	444	2	2	0	0	0	0	copy fasta	RMI2	chr16	11340459	11356760
RMI2_chr16_11340459_11356760	0/0	c0007	444	1	0	0	1	0	0	copy fasta	RMI2	chr16	11340459	11356760
RMI2_chr16_11340459_11356760	0/0	c0008	444	1	1	0	0	0	0	copy fasta	RMI2	chr16	11340459	11356760
RMND1_chr6_151399762_151457126	1/0	c0001	1350	234	41	47	114	11	20	copy fasta	RMND1	chr6	151399762	151457126
RMND1_chr6_151399762_151457126	0/0	c0002	1350	88	10	10	62	0	6	copy fasta	RMND1	chr6	151399762	151457126
RMND1_chr6_151399762_151457126	0/1	c0003	1350	27	3	8	4	3	8	copy fasta	RMND1	chr6	151399762	151457126
RMND1_chr6_151399762_151457126	0/0	c0004	1350	22	20	1	0	0	1	copy fasta	RMND1	chr6	151399762	151457126
RMND1_chr6_151399762_151457126	0/0	c0005	1350	6	6	0	0	0	0	copy fasta	RMND1	chr6	151399762	151457126
RMND1_chr6_151399762_151457126	0/0	c0006	1350	4	4	0	0	0	0	copy fasta	RMND1	chr6	151399762	151457126
RMND1_chr6_151399762_151457126	0/0	c0007	1350	3	3	0	0	0	0	copy fasta	RMND1	chr6	151399762	151457126
RMND1_chr6_151399762_151457126	0/0	c0008	1350	2	0	0	2	0	0	copy fasta	RMND1	chr6	151399762	151457126
RMND1_chr6_151399762_151457126	0/0	c0009	1350	1	0	0	0	0	1	copy fasta	RMND1	chr6	151399762	151457126
RMND1_chr6_151399762_151457126	0/0	c0010	1350	1	1	0	0	0	0	copy fasta	RMND1	chr6	151399762	151457126
RMND1_chr6_151399762_151457126	0/0	c0011	1350	1	1	0	0	0	0	copy fasta	RMND1	chr6	151399762	151457126
RMND1_chr6_151399762_151457126	0/0	c0012	1350	1	1	0	0	0	0	copy fasta	RMND1	chr6	151399762	151457126
RMND1_chr6_151399762_151457126	0/0	c0013	1350	1	1	0	0	0	0	copy fasta	RMND1	chr6	151399762	151457126
RMND1_chr6_151399762_151457126	0/0	c0014	1350	1	1	0	0	0	0	copy fasta	RMND1	chr6	151399762	151457126
RMND5A_chr2_86715291_86783041	0/1	c0001	1176	178	51	35	58	9	24	copy fasta	RMND5A	chr2	86715291	86783041
RMND5A_chr2_86715291_86783041	1/0	c0002	1176	75	23	20	18	5	8	copy fasta	RMND5A	chr2	86715291	86783041
RMND5A_chr2_86715291_86783041	0/0	c0003	1176	34	1	5	24	0	4	copy fasta	RMND5A	chr2	86715291	86783041
RMND5A_chr2_86715291_86783041	0/0	c0004	1176	12	10	2	0	0	0	copy fasta	RMND5A	chr2	86715291	86783041
RMND5A_chr2_86715291_86783041	0/0	c0005	1176	5	1	4	0	0	0	copy fasta	RMND5A	chr2	86715291	86783041
RMND5B_chr5_178126014_178155568	1/1	c0001	1182	366	78	76	156	14	40	copy fasta	RMND5B	chr5	178126014	178155568