JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RMND5B_chr5_178126014_178155568	0/0	c0002	1182	21	7	1	12	1	0	copy fasta	RMND5B	chr5	178126014	178155568
RMND5B_chr5_178126014_178155568	0/0	c0003	1182	12	1	1	5	1	4	copy fasta	RMND5B	chr5	178126014	178155568
RMND5B_chr5_178126014_178155568	0/0	c0004	1182	8	7	1	0	0	0	copy fasta	RMND5B	chr5	178126014	178155568
RMND5B_chr5_178126014_178155568	0/0	c0005	1182	2	2	0	0	0	0	copy fasta	RMND5B	chr5	178126014	178155568
RMND5B_chr5_178126014_178155568	0/0	c0006	1182	1	0	0	1	0	0	copy fasta	RMND5B	chr5	178126014	178155568
RMND5B_chr5_178126014_178155568	0/0	c0007	1182	1	0	1	0	0	0	copy fasta	RMND5B	chr5	178126014	178155568
RMND5B_chr5_178126014_178155568	0/0	c0008	1182	1	1	0	0	0	0	copy fasta	RMND5B	chr5	178126014	178155568
RNASE10_chr14_20500537_20518884	1/1	c0001	651	358	67	82	153	14	40	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	c0002	651	19	12	1	0	2	4	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	c0003	651	6	5	1	0	0	0	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	c0004	651	4	0	0	4	0	0	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	c0005	651	3	3	0	0	0	0	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	c0006	651	3	3	0	0	0	0	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	c0007	651	2	0	0	2	0	0	copy fasta	RNASE10	chr14	20500537	20518884
RNASE10_chr14_20500537_20518884	0/0	c0008	651	1	0	0	1	0	0	copy fasta	RNASE10	chr14	20500537	20518884
RNASE12_chr14_20585073_20596376	1/1	c0001	444	479	92	88	236	16	45	copy fasta	RNASE12	chr14	20585073	20596376
RNASE12_chr14_20585073_20596376	0/0	c0002	444	2	2	0	0	0	0	copy fasta	RNASE12	chr14	20585073	20596376
RNASE12_chr14_20585073_20596376	0/0	c0003	444	1	0	0	0	0	1	copy fasta	RNASE12	chr14	20585073	20596376
RNASE13_chr14_21027818_21039807	1/1	c0001	471	319	37	56	176	12	36	copy fasta	RNASE13	chr14	21027818	21039807
RNASE13_chr14_21027818_21039807	0/0	c0002	471	139	59	21	45	6	8	copy fasta	RNASE13	chr14	21027818	21039807
RNASE13_chr14_21027818_21039807	0/0	c0003	471	9	3	4	0	0	2	copy fasta	RNASE13	chr14	21027818	21039807
RNASE13_chr14_21027818_21039807	0/0	c0004	471	4	0	0	4	0	0	copy fasta	RNASE13	chr14	21027818	21039807
RNASE13_chr14_21027818_21039807	0/0	c0005	471	2	0	0	2	0	0	copy fasta	RNASE13	chr14	21027818	21039807
RNASE13_chr14_21027818_21039807	0/0	c0006	471	1	1	0	0	0	0	copy fasta	RNASE13	chr14	21027818	21039807
RNASE13_chr14_21027818_21039807	0/0	c0007	471	1	0	0	1	0	0	copy fasta	RNASE13	chr14	21027818	21039807
RNASE13_chr14_21027818_21039807	0/0	c0008	471	1	0	0	1	0	0	copy fasta	RNASE13	chr14	21027818	21039807
RNASE13_chr14_21027818_21039807	0/0	c0009	471	1	0	0	1	0	0	copy fasta	RNASE13	chr14	21027818	21039807
RNASE13_chr14_21027818_21039807	0/0	c0010	471	1	0	1	0	0	0	copy fasta	RNASE13	chr14	21027818	21039807
RNASE1_chr14_20796228_20807844	1/1	c0001	471	447	96	81	211	12	45	copy fasta	RNASE1	chr14	20796228	20807844
RNASE1_chr14_20796228_20807844	0/0	c0002	471	2	1	1	0	0	0	copy fasta	RNASE1	chr14	20796228	20807844
RNASE1_chr14_20796228_20807844	0/0	c0003	471	1	1	0	0	0	0	copy fasta	RNASE1	chr14	20796228	20807844
RNASE1_chr14_20796228_20807844	0/0	c0004	471	1	0	0	0	0	1	copy fasta	RNASE1	chr14	20796228	20807844
RNASE1_chr14_20796228_20807844	0/0	c0005	471	1	0	0	1	0	0	copy fasta	RNASE1	chr14	20796228	20807844
RNASE2_chr14_20950487_20961436	1/1	c0001	486	358	68	75	158	14	41	copy fasta	RNASE2	chr14	20950487	20961436
RNASE2_chr14_20950487_20961436	0/0	c0002	486	47	9	0	37	0	1	copy fasta	RNASE2	chr14	20950487	20961436
RNASE2_chr14_20950487_20961436	0/0	c0003	486	3	2	1	0	0	0	copy fasta	RNASE2	chr14	20950487	20961436
RNASE2_chr14_20950487_20961436	0/0	c0004	486	1	1	0	0	0	0	copy fasta	RNASE2	chr14	20950487	20961436
RNASE2_chr14_20950487_20961436	0/0	c0005	486	1	0	0	1	0	0	copy fasta	RNASE2	chr14	20950487	20961436
RNASE3_chr14_20886385_20897348	0/0	c0000	0	1	1	0	0	0	0	copy fasta	RNASE3	chr14	20886385	20897348
RNASE3_chr14_20886385_20897348	0/1	c0001	483	278	25	64	151	11	26	copy fasta	RNASE3	chr14	20886385	20897348
RNASE3_chr14_20886385_20897348	1/0	c0002	483	140	54	16	55	5	9	copy fasta	RNASE3	chr14	20886385	20897348
RNASE3_chr14_20886385_20897348	0/0	c0003	483	1	0	0	1	0	0	copy fasta	RNASE3	chr14	20886385	20897348
RNASE3_chr14_20886385_20897348	0/0	c0004	483	1	0	0	0	0	1	copy fasta	RNASE3	chr14	20886385	20897348
RNASE3_chr14_20886385_20897348	0/0	c0005	483	1	0	0	1	0	0	copy fasta	RNASE3	chr14	20886385	20897348
RNASE4_chr14_20679560_20706216	1/1	c0001	444	400	94	78	177	13	36	copy fasta	RNASE4	chr14	20679560	20706216
RNASE4_chr14_20679560_20706216	0/0	c0002	444	63	1	6	43	3	10	copy fasta	RNASE4	chr14	20679560	20706216
RNASE4_chr14_20679560_20706216	0/0	c0003	444	2	0	0	2	0	0	copy fasta	RNASE4	chr14	20679560	20706216
RNASE4_chr14_20679560_20706216	0/0	c0004	444	1	1	0	0	0	0	copy fasta	RNASE4	chr14	20679560	20706216
RNASE4_chr14_20679560_20706216	0/0	c0005	444	1	0	0	1	0	0	copy fasta	RNASE4	chr14	20679560	20706216
RNASE4_chr14_20679560_20706216	0/0	c0006	444	1	1	0	0	0	0	copy fasta	RNASE4	chr14	20679560	20706216