JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ASXL1_chr20_32353331_32444319	0/0	c0026	4626	1	1	0	0	0	0	copy fasta	ASXL1	chr20	32353331	32444319
ASXL1_chr20_32353331_32444319	0/0	c0027	4626	1	1	0	0	0	0	copy fasta	ASXL1	chr20	32353331	32444319
ASXL2_chr2_25728753_25883487	1/1	c0001	4308	197	67	49	45	7	27	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	c0002	4308	7	5	2	0	0	0	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	c0003	4308	5	0	2	0	0	3	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	c0004	4308	2	0	1	0	1	0	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	c0005	4308	2	2	0	0	0	0	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	c0006	4308	1	0	0	1	0	0	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	c0007	4308	1	1	0	0	0	0	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	c0008	4308	1	1	0	0	0	0	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	c0009	4308	1	0	0	0	0	1	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	c0010	4308	1	1	0	0	0	0	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	c0011	4308	1	0	1	0	0	0	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	c0012	4308	1	0	0	0	0	1	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	c0013	4308	1	0	1	0	0	0	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	c0014	4308	1	1	0	0	0	0	copy fasta	ASXL2	chr2	25728753	25883487
ASXL3_chr18_33573219_33756195	0/1	c0001	6747	124	47	21	37	2	16	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	1/0	c0002	6747	42	5	14	9	4	9	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	c0003	6747	8	8	0	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	c0004	6747	7	6	1	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	c0005	6747	7	0	0	7	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	c0006	6747	7	7	0	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	c0007	6747	3	0	1	1	0	1	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	c0008	6747	2	2	0	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	c0009	6747	2	2	0	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	c0010	6747	2	1	1	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	c0011	6747	1	0	1	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	c0012	6747	1	0	0	0	0	1	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	c0013	6747	1	0	0	1	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	c0014	6747	1	1	0	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	c0015	6747	1	0	0	1	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	c0016	6747	1	0	0	1	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	c0017	6747	1	1	0	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	c0018	6747	1	0	1	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	c0019	6747	1	1	0	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	c0020	6747	1	0	0	0	0	1	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	c0021	6747	1	0	0	1	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	c0022	6747	1	1	0	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	c0023	6747	1	1	0	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	c0024	6747	1	1	0	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	c0025	6747	1	1	0	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	c0026	6747	1	1	0	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASZ1_chr7_117358222_117432493	1/1	c0001	1428	214	72	41	67	9	23	copy fasta	ASZ1	chr7	117358222	117432493
ASZ1_chr7_117358222_117432493	0/0	c0002	1428	84	3	4	66	3	8	copy fasta	ASZ1	chr7	117358222	117432493
ASZ1_chr7_117358222_117432493	0/0	c0003	1428	2	0	2	0	0	0	copy fasta	ASZ1	chr7	117358222	117432493
ASZ1_chr7_117358222_117432493	0/0	c0004	1428	2	2	0	0	0	0	copy fasta	ASZ1	chr7	117358222	117432493
ASZ1_chr7_117358222_117432493	0/0	c0005	1428	1	0	0	0	0	1	copy fasta	ASZ1	chr7	117358222	117432493
ASZ1_chr7_117358222_117432493	0/0	c0006	1428	1	1	0	0	0	0	copy fasta	ASZ1	chr7	117358222	117432493
ASZ1_chr7_117358222_117432493	0/0	c0007	1428	1	0	1	0	0	0	copy fasta	ASZ1	chr7	117358222	117432493
ASZ1_chr7_117358222_117432493	0/0	c0008	1428	1	0	0	1	0	0	copy fasta	ASZ1	chr7	117358222	117432493