JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RNASE4_chr14_20679560_20706216	0/0	c0007	444	1	1	0	0	0	0	copy fasta	RNASE4	chr14	20679560	20706216
RNASE4_chr14_20679560_20706216	0/0	c0008	444	1	0	0	1	0	0	copy fasta	RNASE4	chr14	20679560	20706216
RNASE6_chr14_20776268_20787467	1/1	c0001	453	322	90	62	128	13	27	copy fasta	RNASE6	chr14	20776268	20787467
RNASE6_chr14_20776268_20787467	0/0	c0002	453	129	8	18	80	3	20	copy fasta	RNASE6	chr14	20776268	20787467
RNASE6_chr14_20776268_20787467	0/0	c0003	453	9	0	0	9	0	0	copy fasta	RNASE6	chr14	20776268	20787467
RNASE6_chr14_20776268_20787467	0/0	c0004	453	4	0	2	0	2	0	copy fasta	RNASE6	chr14	20776268	20787467
RNASE6_chr14_20776268_20787467	0/0	c0005	453	2	0	0	1	0	1	copy fasta	RNASE6	chr14	20776268	20787467
RNASE7_chr14_21037362_21049233	0/1	c0001	471	396	69	81	200	15	30	copy fasta	RNASE7	chr14	21037362	21049233
RNASE7_chr14_21037362_21049233	1/0	c0002	471	72	18	6	29	2	16	copy fasta	RNASE7	chr14	21037362	21049233
RNASE7_chr14_21037362_21049233	0/0	c0003	471	7	7	0	0	0	0	copy fasta	RNASE7	chr14	21037362	21049233
RNASE7_chr14_21037362_21049233	0/0	c0004	471	4	4	0	0	0	0	copy fasta	RNASE7	chr14	21037362	21049233
RNASE7_chr14_21037362_21049233	0/0	c0005	471	2	1	1	0	0	0	copy fasta	RNASE7	chr14	21037362	21049233
RNASE7_chr14_21037362_21049233	0/0	c0006	471	1	1	0	0	0	0	copy fasta	RNASE7	chr14	21037362	21049233
RNASE7_chr14_21037362_21049233	0/0	c0007	471	1	0	0	1	0	0	copy fasta	RNASE7	chr14	21037362	21049233
RNASE7_chr14_21037362_21049233	0/0	c0008	471	1	0	0	0	1	0	copy fasta	RNASE7	chr14	21037362	21049233
RNASE8_chr14_21052822_21063455	0/0	c0001	465	227	38	38	115	12	24	copy fasta	RNASE8	chr14	21052822	21063455
RNASE8_chr14_21052822_21063455	1/1	c0002	465	213	57	44	78	6	26	copy fasta	RNASE8	chr14	21052822	21063455
RNASE8_chr14_21052822_21063455	0/0	c0003	465	3	0	0	3	0	0	copy fasta	RNASE8	chr14	21052822	21063455
RNASE8_chr14_21052822_21063455	0/0	c0004	465	2	2	0	0	0	0	copy fasta	RNASE8	chr14	21052822	21063455
RNASE8_chr14_21052822_21063455	0/0	c0005	465	1	1	0	0	0	0	copy fasta	RNASE8	chr14	21052822	21063455
RNASE8_chr14_21052822_21063455	0/0	c0006	465	1	0	0	1	0	0	copy fasta	RNASE8	chr14	21052822	21063455
RNASE8_chr14_21052822_21063455	0/0	c0007	465	1	0	0	1	0	0	copy fasta	RNASE8	chr14	21052822	21063455
RNASE9_chr14_20551093_20566047	0/1	c0001	615	262	10	49	149	13	40	copy fasta	RNASE9	chr14	20551093	20566047
RNASE9_chr14_20551093_20566047	1/0	c0002	615	135	15	28	84	5	2	copy fasta	RNASE9	chr14	20551093	20566047
RNASE9_chr14_20551093_20566047	0/0	c0003	615	42	39	3	0	0	0	copy fasta	RNASE9	chr14	20551093	20566047
RNASE9_chr14_20551093_20566047	0/0	c0004	615	14	9	2	1	0	2	copy fasta	RNASE9	chr14	20551093	20566047
RNASE9_chr14_20551093_20566047	0/0	c0005	615	7	6	1	0	0	0	copy fasta	RNASE9	chr14	20551093	20566047
RNASE9_chr14_20551093_20566047	0/0	c0006	615	6	5	1	0	0	0	copy fasta	RNASE9	chr14	20551093	20566047
RNASE9_chr14_20551093_20566047	0/0	c0007	615	3	3	0	0	0	0	copy fasta	RNASE9	chr14	20551093	20566047
RNASE9_chr14_20551093_20566047	0/0	c0008	615	2	2	0	0	0	0	copy fasta	RNASE9	chr14	20551093	20566047
RNASE9_chr14_20551093_20566047	0/0	c0009	615	2	2	0	0	0	0	copy fasta	RNASE9	chr14	20551093	20566047
RNASE9_chr14_20551093_20566047	0/0	c0010	615	2	2	0	0	0	0	copy fasta	RNASE9	chr14	20551093	20566047
RNASE9_chr14_20551093_20566047	0/0	c0011	615	1	1	0	0	0	0	copy fasta	RNASE9	chr14	20551093	20566047
RNASE9_chr14_20551093_20566047	0/0	c0012	615	1	1	0	0	0	0	copy fasta	RNASE9	chr14	20551093	20566047
RNASE9_chr14_20551093_20566047	0/0	c0013	615	1	1	0	0	0	0	copy fasta	RNASE9	chr14	20551093	20566047
RNASEH1_chr2_3536430_3563333	1/0	c0001	861	247	33	52	121	13	27	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/1	c0002	861	154	63	16	52	5	17	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	c0003	861	2	0	0	2	0	0	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	c0004	861	1	0	0	1	0	0	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	c0005	861	1	0	0	1	0	0	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	c0006	861	1	0	0	1	0	0	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	c0007	861	1	0	0	1	0	0	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH1_chr2_3536430_3563333	0/0	c0008	861	1	0	0	1	0	0	copy fasta	RNASEH1	chr2	3536430	3563333
RNASEH2A_chr19_12801584_12818640	1/0	c0001	900	382	73	69	181	16	42	copy fasta	RNASEH2A	chr19	12801584	12818640
RNASEH2A_chr19_12801584_12818640	0/0	c0002	900	13	13	0	0	0	0	copy fasta	RNASEH2A	chr19	12801584	12818640
RNASEH2A_chr19_12801584_12818640	0/1	c0003	900	9	3	4	1	0	0	copy fasta	RNASEH2A	chr19	12801584	12818640
RNASEH2A_chr19_12801584_12818640	0/0	c0004	900	2	1	1	0	0	0	copy fasta	RNASEH2A	chr19	12801584	12818640
RNASEH2A_chr19_12801584_12818640	0/0	c0005	900	2	2	0	0	0	0	copy fasta	RNASEH2A	chr19	12801584	12818640
RNASEH2A_chr19_12801584_12818640	0/0	c0006	900	1	0	0	1	0	0	copy fasta	RNASEH2A	chr19	12801584	12818640
RNASEH2A_chr19_12801584_12818640	0/0	c0007	900	1	1	0	0	0	0	copy fasta	RNASEH2A	chr19	12801584	12818640