JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RNASEH2A_chr19_12801584_12818640	0/0	c0008	900	1	1	0	0	0	0	copy fasta	RNASEH2A	chr19	12801584	12818640
RNASEH2A_chr19_12801584_12818640	0/0	c0009	900	1	0	0	1	0	0	copy fasta	RNASEH2A	chr19	12801584	12818640
RNASEH2B_chr13_50904791_50961762	1/1	c0001	939	359	78	74	163	10	32	copy fasta	RNASEH2B	chr13	50904791	50961762
RNASEH2B_chr13_50904791_50961762	0/0	c0002	940	11	7	0	0	0	4	copy fasta	RNASEH2B	chr13	50904791	50961762
RNASEH2B_chr13_50904791_50961762	0/0	c0003	939	5	5	0	0	0	0	copy fasta	RNASEH2B	chr13	50904791	50961762
RNASEH2B_chr13_50904791_50961762	0/0	c0004	939	5	5	0	0	0	0	copy fasta	RNASEH2B	chr13	50904791	50961762
RNASEH2B_chr13_50904791_50961762	0/0	c0005	939	1	0	0	0	0	1	copy fasta	RNASEH2B	chr13	50904791	50961762
RNASEH2B_chr13_50904791_50961762	0/0	c0006	939	1	1	0	0	0	0	copy fasta	RNASEH2B	chr13	50904791	50961762
RNASEH2B_chr13_50904791_50961762	0/0	c0007	939	1	0	0	0	0	1	copy fasta	RNASEH2B	chr13	50904791	50961762
RNASEH2B_chr13_50904791_50961762	0/0	c0008	939	1	0	0	1	0	0	copy fasta	RNASEH2B	chr13	50904791	50961762
RNASEH2C_chr11_65712673_65725798	1/1	c0001	495	421	96	82	188	18	35	copy fasta	RNASEH2C	chr11	65712673	65725798
RNASEH2C_chr11_65712673_65725798	0/0	c0002	492	22	0	0	22	0	0	copy fasta	RNASEH2C	chr11	65712673	65725798
RNASEH2C_chr11_65712673_65725798	0/0	c0003	495	2	0	0	2	0	0	copy fasta	RNASEH2C	chr11	65712673	65725798
RNASEH2C_chr11_65712673_65725798	0/0	c0004	495	1	0	0	0	0	1	copy fasta	RNASEH2C	chr11	65712673	65725798
RNASEK_chr17_7007624_7019532	1/1	c0001	297	391	87	76	170	16	40	copy fasta	RNASEK	chr17	7007624	7019532
RNASEK_chr17_7007624_7019532	0/0	c0002	297	1	1	0	0	0	0	copy fasta	RNASEK	chr17	7007624	7019532
RNASEL_chr1_182568634_182594256	1/1	c0001	2226	189	55	37	71	7	17	copy fasta	RNASEL	chr1	182568634	182594256
RNASEL_chr1_182568634_182594256	0/0	c0002	2226	140	21	18	88	4	9	copy fasta	RNASEL	chr1	182568634	182594256
RNASEL_chr1_182568634_182594256	0/0	c0003	2226	79	1	17	40	5	16	copy fasta	RNASEL	chr1	182568634	182594256
RNASEL_chr1_182568634_182594256	0/0	c0004	2226	8	6	2	0	0	0	copy fasta	RNASEL	chr1	182568634	182594256
RNASEL_chr1_182568634_182594256	0/0	c0005	2226	1	0	0	1	0	0	copy fasta	RNASEL	chr1	182568634	182594256
RNASEL_chr1_182568634_182594256	0/0	c0006	2226	1	0	0	1	0	0	copy fasta	RNASEL	chr1	182568634	182594256
RNASEL_chr1_182568634_182594256	0/0	c0007	2226	1	0	1	0	0	0	copy fasta	RNASEL	chr1	182568634	182594256
RNASEL_chr1_182568634_182594256	0/0	c0008	2226	1	1	0	0	0	0	copy fasta	RNASEL	chr1	182568634	182594256
RNASEL_chr1_182568634_182594256	0/0	c0009	2226	1	1	0	0	0	0	copy fasta	RNASEL	chr1	182568634	182594256
RNASEL_chr1_182568634_182594256	0/0	c0010	2226	1	0	0	1	0	0	copy fasta	RNASEL	chr1	182568634	182594256
RNASEL_chr1_182568634_182594256	0/0	c0011	2226	1	0	0	1	0	0	copy fasta	RNASEL	chr1	182568634	182594256
RNASEL_chr1_182568634_182594256	0/0	c0012	2226	1	0	0	0	0	1	copy fasta	RNASEL	chr1	182568634	182594256
RNASEL_chr1_182568634_182594256	0/0	c0013	2226	1	0	0	1	0	0	copy fasta	RNASEL	chr1	182568634	182594256
RNASEL_chr1_182568634_182594256	0/0	c0014	2226	1	0	1	0	0	0	copy fasta	RNASEL	chr1	182568634	182594256
RNASEL_chr1_182568634_182594256	0/0	c0015	2226	1	0	1	0	0	0	copy fasta	RNASEL	chr1	182568634	182594256
RNASEL_chr1_182568634_182594256	0/0	c0016	2226	1	0	1	0	0	0	copy fasta	RNASEL	chr1	182568634	182594256
RNASEL_chr1_182568634_182594256	0/0	c0017	2226	1	1	0	0	0	0	copy fasta	RNASEL	chr1	182568634	182594256
RNASEL_chr1_182568634_182594256	0/0	c0018	2226	1	1	0	0	0	0	copy fasta	RNASEL	chr1	182568634	182594256
RNASEL_chr1_182568634_182594256	0/0	c0019	2226	1	0	0	0	0	1	copy fasta	RNASEL	chr1	182568634	182594256
RNASEL_chr1_182568634_182594256	0/0	c0020	2226	1	0	0	1	0	0	copy fasta	RNASEL	chr1	182568634	182594256
RNASEL_chr1_182568634_182594256	0/0	c0021	2226	1	0	0	1	0	0	copy fasta	RNASEL	chr1	182568634	182594256
RNASEL_chr1_182568634_182594256	0/0	c0022	2226	1	1	0	0	0	0	copy fasta	RNASEL	chr1	182568634	182594256
RNASET2_chr6_166917113_166961550	1/0	c0001	771	202	24	45	90	11	31	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	c0002	771	48	11	1	31	0	5	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	c0003	771	43	32	5	0	1	5	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	c0004	771	17	7	0	9	0	1	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	c0005	771	8	8	0	0	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	c0006	771	5	2	2	0	1	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	c0007	771	5	4	1	0	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/1	c0008	771	4	0	2	0	1	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	c0009	771	4	3	1	0	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	c0010	771	2	2	0	0	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	c0011	771	1	0	0	0	0	1	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	c0012	771	1	0	0	1	0	0	copy fasta	RNASET2	chr6	166917113	166961550