JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RNASET2_chr6_166917113_166961550	0/0	c0013	771	1	1	0	0	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	c0014	771	1	0	0	1	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	c0015	771	1	0	0	0	0	1	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	c0016	771	1	0	1	0	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	c0017	771	1	1	0	0	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RNASET2_chr6_166917113_166961550	0/0	c0018	771	1	1	0	0	0	0	copy fasta	RNASET2	chr6	166917113	166961550
RND1_chr12_48852145_48870870	1/1	c0001	699	231	68	33	98	10	20	copy fasta	RND1	chr12	48852145	48870870
RND1_chr12_48852145_48870870	0/0	c0002	699	167	20	40	81	6	20	copy fasta	RND1	chr12	48852145	48870870
RND1_chr12_48852145_48870870	0/0	c0003	699	1	0	0	1	0	0	copy fasta	RND1	chr12	48852145	48870870
RND1_chr12_48852145_48870870	0/0	c0004	699	1	0	1	0	0	0	copy fasta	RND1	chr12	48852145	48870870
RND2_chr17_43020231_43037041	1/1	c0001	684	316	82	55	131	8	38	copy fasta	RND2	chr17	43020231	43037041
RND2_chr17_43020231_43037041	0/0	c0002	684	2	0	2	0	0	0	copy fasta	RND2	chr17	43020231	43037041
RND2_chr17_43020231_43037041	0/0	c0003	684	1	0	0	1	0	0	copy fasta	RND2	chr17	43020231	43037041
RND2_chr17_43020231_43037041	0/0	c0004	684	1	1	0	0	0	0	copy fasta	RND2	chr17	43020231	43037041
RND2_chr17_43020231_43037041	0/0	c0005	684	1	1	0	0	0	0	copy fasta	RND2	chr17	43020231	43037041
RND2_chr17_43020231_43037041	0/0	c0006	684	1	0	1	0	0	0	copy fasta	RND2	chr17	43020231	43037041
RND3_chr2_150463195_150492667	1/1	c0001	735	410	89	70	185	18	46	copy fasta	RND3	chr2	150463195	150492667
RND3_chr2_150463195_150492667	0/0	c0002	735	6	6	0	0	0	0	copy fasta	RND3	chr2	150463195	150492667
RND3_chr2_150463195_150492667	0/0	c0003	735	3	0	0	3	0	0	copy fasta	RND3	chr2	150463195	150492667
RND3_chr2_150463195_150492667	0/0	c0004	735	1	1	0	0	0	0	copy fasta	RND3	chr2	150463195	150492667
RNF103_chr2_86598398_86628865	1/1	c0001	2058	363	65	67	174	16	39	copy fasta	RNF103	chr2	86598398	86628865
RNF103_chr2_86598398_86628865	0/0	c0002	2058	27	27	0	0	0	0	copy fasta	RNF103	chr2	86598398	86628865
RNF103_chr2_86598398_86628865	0/0	c0003	2058	5	0	0	0	0	5	copy fasta	RNF103	chr2	86598398	86628865
RNF103_chr2_86598398_86628865	0/0	c0004	2058	3	0	3	0	0	0	copy fasta	RNF103	chr2	86598398	86628865
RNF103_chr2_86598398_86628865	0/0	c0005	2058	1	0	0	1	0	0	copy fasta	RNF103	chr2	86598398	86628865
RNF103_chr2_86598398_86628865	0/0	c0006	2058	1	0	1	0	0	0	copy fasta	RNF103	chr2	86598398	86628865
RNF103_chr2_86598398_86628865	0/0	c0007	2058	1	0	1	0	0	0	copy fasta	RNF103	chr2	86598398	86628865
RNF103_chr2_86598398_86628865	0/0	c0008	2058	1	0	0	1	0	0	copy fasta	RNF103	chr2	86598398	86628865
RNF10_chr12_120529356_120582588	1/1	c0001	2436	357	87	67	153	14	34	copy fasta	RNF10	chr12	120529356	120582588
RNF10_chr12_120529356_120582588	0/0	c0002	2436	3	3	0	0	0	0	copy fasta	RNF10	chr12	120529356	120582588
RNF10_chr12_120529356_120582588	0/0	c0003	2436	3	0	3	0	0	0	copy fasta	RNF10	chr12	120529356	120582588
RNF10_chr12_120529356_120582588	0/0	c0004	2436	2	0	0	2	0	0	copy fasta	RNF10	chr12	120529356	120582588
RNF10_chr12_120529356_120582588	0/0	c0005	2436	1	0	1	0	0	0	copy fasta	RNF10	chr12	120529356	120582588
RNF10_chr12_120529356_120582588	0/0	c0006	2436	1	1	0	0	0	0	copy fasta	RNF10	chr12	120529356	120582588
RNF10_chr12_120529356_120582588	0/0	c0007	2436	1	0	0	1	0	0	copy fasta	RNF10	chr12	120529356	120582588
RNF10_chr12_120529356_120582588	0/0	c0008	2436	1	0	0	1	0	0	copy fasta	RNF10	chr12	120529356	120582588
RNF10_chr12_120529356_120582588	0/0	c0009	2436	1	1	0	0	0	0	copy fasta	RNF10	chr12	120529356	120582588
RNF10_chr12_120529356_120582588	0/0	c0010	2436	1	0	1	0	0	0	copy fasta	RNF10	chr12	120529356	120582588
RNF10_chr12_120529356_120582588	0/0	c0011	2436	1	0	0	1	0	0	copy fasta	RNF10	chr12	120529356	120582588
RNF111_chr15_58982663_59102419	0/0	c0001	2961	185	61	32	75	5	12	copy fasta	RNF111	chr15	58982663	59102419
RNF111_chr15_58982663_59102419	1/0	c0002	2961	82	21	6	42	3	9	copy fasta	RNF111	chr15	58982663	59102419
RNF111_chr15_58982663_59102419	0/0	c0003	2961	39	2	14	13	4	6	copy fasta	RNF111	chr15	58982663	59102419
RNF111_chr15_58982663_59102419	0/1	c0004	2961	8	1	4	0	2	0	copy fasta	RNF111	chr15	58982663	59102419
RNF111_chr15_58982663_59102419	0/0	c0005	2961	2	0	0	2	0	0	copy fasta	RNF111	chr15	58982663	59102419
RNF111_chr15_58982663_59102419	0/0	c0006	2961	2	0	2	0	0	0	copy fasta	RNF111	chr15	58982663	59102419
RNF111_chr15_58982663_59102419	0/0	c0007	2961	1	1	0	0	0	0	copy fasta	RNF111	chr15	58982663	59102419
RNF111_chr15_58982663_59102419	0/0	c0008	2961	1	0	1	0	0	0	copy fasta	RNF111	chr15	58982663	59102419
RNF111_chr15_58982663_59102419	0/0	c0009	2961	1	0	0	1	0	0	copy fasta	RNF111	chr15	58982663	59102419
RNF111_chr15_58982663_59102419	0/0	c0010	2961	1	0	1	0	0	0	copy fasta	RNF111	chr15	58982663	59102419
RNF111_chr15_58982663_59102419	0/0	c0011	2961	1	0	0	0	0	1	copy fasta	RNF111	chr15	58982663	59102419