JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RNF111_chr15_58982663_59102419	0/0	c0012	2961	1	0	0	1	0	0	copy fasta	RNF111	chr15	58982663	59102419
RNF111_chr15_58982663_59102419	0/0	c0013	2961	1	0	0	0	0	1	copy fasta	RNF111	chr15	58982663	59102419
RNF111_chr15_58982663_59102419	0/0	c0014	2961	1	0	0	1	0	0	copy fasta	RNF111	chr15	58982663	59102419
RNF111_chr15_58982663_59102419	0/0	c0015	2961	1	0	0	1	0	0	copy fasta	RNF111	chr15	58982663	59102419
RNF111_chr15_58982663_59102419	0/0	c0016	2961	1	0	0	1	0	0	copy fasta	RNF111	chr15	58982663	59102419
RNF111_chr15_58982663_59102419	0/0	c0017	2961	1	0	0	0	0	1	copy fasta	RNF111	chr15	58982663	59102419
RNF111_chr15_58982663_59102419	0/0	c0018	2961	1	0	0	1	0	0	copy fasta	RNF111	chr15	58982663	59102419
RNF112_chr17_19406232_19422276	1/1	c0001	1896	251	55	57	95	12	30	copy fasta	RNF112	chr17	19406232	19422276
RNF112_chr17_19406232_19422276	0/0	c0002	1896	87	28	7	41	0	11	copy fasta	RNF112	chr17	19406232	19422276
RNF112_chr17_19406232_19422276	0/0	c0003	1896	11	0	0	11	0	0	copy fasta	RNF112	chr17	19406232	19422276
RNF112_chr17_19406232_19422276	0/0	c0004	1896	2	0	0	2	0	0	copy fasta	RNF112	chr17	19406232	19422276
RNF112_chr17_19406232_19422276	0/0	c0005	1896	2	0	0	2	0	0	copy fasta	RNF112	chr17	19406232	19422276
RNF112_chr17_19406232_19422276	0/0	c0006	1896	1	0	0	1	0	0	copy fasta	RNF112	chr17	19406232	19422276
RNF112_chr17_19406232_19422276	0/0	c0007	1896	1	1	0	0	0	0	copy fasta	RNF112	chr17	19406232	19422276
RNF112_chr17_19406232_19422276	0/0	c0008	1896	1	0	0	0	0	1	copy fasta	RNF112	chr17	19406232	19422276
RNF113A_chrX_119865475_119876733	1/1	c0001	1032	302	76	46	135	13	30	copy fasta	RNF113A	chrX	119865475	119876733
RNF113A_chrX_119865475_119876733	0/0	c0002	1033	1	0	0	1	0	0	copy fasta	RNF113A	chrX	119865475	119876733
RNF113B_chr13_98170785_98182269	0/1	c0001	969	326	19	65	182	18	41	copy fasta	RNF113B	chr13	98170785	98182269
RNF113B_chr13_98170785_98182269	0/0	c0002	969	60	24	6	23	0	7	copy fasta	RNF113B	chr13	98170785	98182269
RNF113B_chr13_98170785_98182269	1/0	c0003	969	43	38	3	1	0	0	copy fasta	RNF113B	chr13	98170785	98182269
RNF113B_chr13_98170785_98182269	0/0	c0004	969	8	7	1	0	0	0	copy fasta	RNF113B	chr13	98170785	98182269
RNF113B_chr13_98170785_98182269	0/0	c0005	969	8	0	0	8	0	0	copy fasta	RNF113B	chr13	98170785	98182269
RNF113B_chr13_98170785_98182269	0/0	c0006	969	6	6	0	0	0	0	copy fasta	RNF113B	chr13	98170785	98182269
RNF113B_chr13_98170785_98182269	0/0	c0007	969	5	0	0	5	0	0	copy fasta	RNF113B	chr13	98170785	98182269
RNF113B_chr13_98170785_98182269	0/0	c0008	969	1	1	0	0	0	0	copy fasta	RNF113B	chr13	98170785	98182269
RNF113B_chr13_98170785_98182269	0/0	c0009	969	1	0	0	1	0	0	copy fasta	RNF113B	chr13	98170785	98182269
RNF113B_chr13_98170785_98182269	0/0	c0010	969	1	0	1	0	0	0	copy fasta	RNF113B	chr13	98170785	98182269
RNF113B_chr13_98170785_98182269	0/0	c0011	969	1	1	0	0	0	0	copy fasta	RNF113B	chr13	98170785	98182269
RNF114_chr20_49931397_49958885	1/1	c0001	687	422	86	73	209	14	38	copy fasta	RNF114	chr20	49931397	49958885
RNF114_chr20_49931397_49958885	0/0	c0002	687	1	1	0	0	0	0	copy fasta	RNF114	chr20	49931397	49958885
RNF114_chr20_49931397_49958885	0/0	c0003	687	1	0	0	1	0	0	copy fasta	RNF114	chr20	49931397	49958885
RNF114_chr20_49931397_49958885	0/0	c0004	687	1	0	1	0	0	0	copy fasta	RNF114	chr20	49931397	49958885
RNF114_chr20_49931397_49958885	0/0	c0005	687	1	1	0	0	0	0	copy fasta	RNF114	chr20	49931397	49958885
RNF115_chr1_145733868_145829095	1/1	c0001	915	270	76	54	101	14	23	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	c0002	915	1	0	0	1	0	0	copy fasta	RNF115	chr1	145733868	145829095
RNF115_chr1_145733868_145829095	0/0	c0003	915	1	0	0	0	0	1	copy fasta	RNF115	chr1	145733868	145829095
RNF11_chr1_51231273_51278447	1/1	c0001	465	274	80	36	116	12	28	copy fasta	RNF11	chr1	51231273	51278447
RNF121_chr11_71924046_72002597	1/1	c0001	984	227	78	35	85	8	19	copy fasta	RNF121	chr11	71924046	72002597
RNF121_chr11_71924046_72002597	0/0	c0002	984	14	0	2	5	0	7	copy fasta	RNF121	chr11	71924046	72002597
RNF121_chr11_71924046_72002597	0/0	c0003	984	11	10	1	0	0	0	copy fasta	RNF121	chr11	71924046	72002597
RNF121_chr11_71924046_72002597	0/0	c0004	984	1	1	0	0	0	0	copy fasta	RNF121	chr11	71924046	72002597
RNF121_chr11_71924046_72002597	0/0	c0005	984	1	1	0	0	0	0	copy fasta	RNF121	chr11	71924046	72002597
RNF122_chr8_33542754_33572128	0/1	c0001	468	157	31	36	63	7	19	copy fasta	RNF122	chr8	33542754	33572128
RNF122_chr8_33542754_33572128	1/0	c0002	468	127	15	23	65	5	18	copy fasta	RNF122	chr8	33542754	33572128
RNF122_chr8_33542754_33572128	0/0	c0003	468	45	18	3	18	0	6	copy fasta	RNF122	chr8	33542754	33572128
RNF122_chr8_33542754_33572128	0/0	c0004	468	21	18	0	3	0	0	copy fasta	RNF122	chr8	33542754	33572128
RNF122_chr8_33542754_33572128	0/0	c0005	468	7	6	0	1	0	0	copy fasta	RNF122	chr8	33542754	33572128
RNF122_chr8_33542754_33572128	0/0	c0006	468	2	0	2	0	0	0	copy fasta	RNF122	chr8	33542754	33572128
RNF122_chr8_33542754_33572128	0/0	c0007	468	1	0	0	0	0	1	copy fasta	RNF122	chr8	33542754	33572128
RNF123_chr3_49684557_49726529	1/0	c0001	3945	154	52	28	44	12	17	copy fasta	RNF123	chr3	49684557	49726529