JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RNF123_chr3_49684557_49726529	0/0	c0002	3945	77	20	15	29	1	12	copy fasta	RNF123	chr3	49684557	49726529
RNF123_chr3_49684557_49726529	0/0	c0003	3945	15	0	6	5	2	2	copy fasta	RNF123	chr3	49684557	49726529
RNF123_chr3_49684557_49726529	0/0	c0004	3945	7	0	7	0	0	0	copy fasta	RNF123	chr3	49684557	49726529
RNF123_chr3_49684557_49726529	0/0	c0005	3945	7	6	0	0	0	1	copy fasta	RNF123	chr3	49684557	49726529
RNF123_chr3_49684557_49726529	0/0	c0006	3945	4	4	0	0	0	0	copy fasta	RNF123	chr3	49684557	49726529
RNF123_chr3_49684557_49726529	0/0	c0007	3945	3	0	0	2	0	1	copy fasta	RNF123	chr3	49684557	49726529
RNF123_chr3_49684557_49726529	0/0	c0008	3945	3	2	0	1	0	0	copy fasta	RNF123	chr3	49684557	49726529
RNF123_chr3_49684557_49726529	0/0	c0009	3945	2	0	0	2	0	0	copy fasta	RNF123	chr3	49684557	49726529
RNF123_chr3_49684557_49726529	0/0	c0010	3945	2	2	0	0	0	0	copy fasta	RNF123	chr3	49684557	49726529
RNF123_chr3_49684557_49726529	0/0	c0011	3945	2	0	0	0	0	2	copy fasta	RNF123	chr3	49684557	49726529
RNF123_chr3_49684557_49726529	0/0	c0012	3945	2	0	0	0	2	0	copy fasta	RNF123	chr3	49684557	49726529
RNF123_chr3_49684557_49726529	0/0	c0013	3945	1	0	0	0	1	0	copy fasta	RNF123	chr3	49684557	49726529
RNF123_chr3_49684557_49726529	0/0	c0014	3945	1	1	0	0	0	0	copy fasta	RNF123	chr3	49684557	49726529
RNF123_chr3_49684557_49726529	0/0	c0015	3945	1	0	1	0	0	0	copy fasta	RNF123	chr3	49684557	49726529
RNF123_chr3_49684557_49726529	0/0	c0016	3945	1	0	1	0	0	0	copy fasta	RNF123	chr3	49684557	49726529
RNF123_chr3_49684557_49726529	0/0	c0017	3945	1	0	0	0	0	1	copy fasta	RNF123	chr3	49684557	49726529
RNF123_chr3_49684557_49726529	0/0	c0018	3945	1	1	0	0	0	0	copy fasta	RNF123	chr3	49684557	49726529
RNF123_chr3_49684557_49726529	0/0	c0019	3945	1	1	0	0	0	0	copy fasta	RNF123	chr3	49684557	49726529
RNF123_chr3_49684557_49726529	0/0	c0020	3945	1	0	0	1	0	0	copy fasta	RNF123	chr3	49684557	49726529
RNF123_chr3_49684557_49726529	0/0	c0021	3945	1	1	0	0	0	0	copy fasta	RNF123	chr3	49684557	49726529
RNF123_chr3_49684557_49726529	0/0	c0022	3945	1	0	0	1	0	0	copy fasta	RNF123	chr3	49684557	49726529
RNF123_chr3_49684557_49726529	0/0	c0023	3945	1	0	0	1	0	0	copy fasta	RNF123	chr3	49684557	49726529
RNF123_chr3_49684557_49726529	0/1	c0024	3945	1	0	0	0	0	0	copy fasta	RNF123	chr3	49684557	49726529
RNF125_chr18_32013825_32078219	1/0	c0001	699	292	86	53	110	10	32	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	c0002	699	38	3	2	31	0	2	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/1	c0003	699	22	1	7	7	2	4	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	c0004	699	2	2	0	0	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	c0005	699	2	2	0	0	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	c0006	699	1	1	0	0	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	c0007	699	1	1	0	0	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	c0008	699	1	0	1	0	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF125_chr18_32013825_32078219	0/0	c0009	699	1	0	1	0	0	0	copy fasta	RNF125	chr18	32013825	32078219
RNF126_chr19_642526_668214	1/1	c0001	936	279	57	42	139	7	32	copy fasta	RNF126	chr19	642526	668214
RNF126_chr19_642526_668214	0/0	c0002	936	102	35	31	21	5	10	copy fasta	RNF126	chr19	642526	668214
RNF126_chr19_642526_668214	0/0	c0003	936	22	0	5	14	1	2	copy fasta	RNF126	chr19	642526	668214
RNF126_chr19_642526_668214	0/0	c0004	936	12	0	1	6	3	2	copy fasta	RNF126	chr19	642526	668214
RNF126_chr19_642526_668214	0/0	c0005	936	4	4	0	0	0	0	copy fasta	RNF126	chr19	642526	668214
RNF126_chr19_642526_668214	0/0	c0006	936	4	0	1	3	0	0	copy fasta	RNF126	chr19	642526	668214
RNF126_chr19_642526_668214	0/0	c0007	936	3	0	0	3	0	0	copy fasta	RNF126	chr19	642526	668214
RNF126_chr19_642526_668214	0/0	c0008	936	2	0	1	1	0	0	copy fasta	RNF126	chr19	642526	668214
RNF126_chr19_642526_668214	0/0	c0009	936	2	0	0	0	2	0	copy fasta	RNF126	chr19	642526	668214
RNF126_chr19_642526_668214	0/0	c0010	936	1	0	0	1	0	0	copy fasta	RNF126	chr19	642526	668214
RNF126_chr19_642526_668214	0/0	c0011	936	1	0	0	1	0	0	copy fasta	RNF126	chr19	642526	668214
RNF126_chr19_642526_668214	0/0	c0012	936	1	0	0	1	0	0	copy fasta	RNF126	chr19	642526	668214
RNF126_chr19_642526_668214	0/0	c0013	936	1	0	1	0	0	0	copy fasta	RNF126	chr19	642526	668214
RNF128_chrX_106721701_106802016	1/1	c0001	1287	207	64	41	73	7	20	copy fasta	RNF128	chrX	106721701	106802016
RNF128_chrX_106721701_106802016	0/0	c0002	1287	1	0	0	1	0	0	copy fasta	RNF128	chrX	106721701	106802016
RNF128_chrX_106721701_106802016	0/0	c0003	1287	1	0	0	1	0	0	copy fasta	RNF128	chrX	106721701	106802016
RNF130_chr5_179950067_180076759	1/0	c0001	1260	138	68	18	41	4	6	copy fasta	RNF130	chr5	179950067	180076759
RNF130_chr5_179950067_180076759	0/1	c0002	1260	123	11	27	63	7	14	copy fasta	RNF130	chr5	179950067	180076759