JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RNF130_chr5_179950067_180076759	0/0	c0003	1260	53	12	21	12	3	5	copy fasta	RNF130	chr5	179950067	180076759
RNF130_chr5_179950067_180076759	0/0	c0004	1260	12	0	1	10	0	1	copy fasta	RNF130	chr5	179950067	180076759
RNF130_chr5_179950067_180076759	0/0	c0005	1260	4	4	0	0	0	0	copy fasta	RNF130	chr5	179950067	180076759
RNF130_chr5_179950067_180076759	0/0	c0006	1260	3	0	3	0	0	0	copy fasta	RNF130	chr5	179950067	180076759
RNF130_chr5_179950067_180076759	0/0	c0007	1260	1	0	0	0	0	1	copy fasta	RNF130	chr5	179950067	180076759
RNF130_chr5_179950067_180076759	0/0	c0008	1260	1	0	0	1	0	0	copy fasta	RNF130	chr5	179950067	180076759
RNF130_chr5_179950067_180076759	0/0	c0009	1260	1	0	0	0	0	1	copy fasta	RNF130	chr5	179950067	180076759
RNF130_chr5_179950067_180076759	0/0	c0010	1260	1	0	1	0	0	0	copy fasta	RNF130	chr5	179950067	180076759
RNF130_chr5_179950067_180076759	0/0	c0011	1260	1	0	0	1	0	0	copy fasta	RNF130	chr5	179950067	180076759
RNF130_chr5_179950067_180076759	0/0	c0012	1260	1	0	1	0	0	0	copy fasta	RNF130	chr5	179950067	180076759
RNF130_chr5_179950067_180076759	0/0	c0013	1260	1	1	0	0	0	0	copy fasta	RNF130	chr5	179950067	180076759
RNF133_chr7_122692735_122704117	1/1	c0001	1131	426	94	73	203	13	41	copy fasta	RNF133	chr7	122692735	122704117
RNF133_chr7_122692735_122704117	0/0	c0002	1131	6	0	4	0	1	1	copy fasta	RNF133	chr7	122692735	122704117
RNF133_chr7_122692735_122704117	0/0	c0003	1131	6	0	0	6	0	0	copy fasta	RNF133	chr7	122692735	122704117
RNF133_chr7_122692735_122704117	0/0	c0004	1131	4	4	0	0	0	0	copy fasta	RNF133	chr7	122692735	122704117
RNF133_chr7_122692735_122704117	0/0	c0005	1131	2	0	0	0	0	2	copy fasta	RNF133	chr7	122692735	122704117
RNF133_chr7_122692735_122704117	0/0	c0006	1131	1	0	0	1	0	0	copy fasta	RNF133	chr7	122692735	122704117
RNF133_chr7_122692735_122704117	0/0	c0007	1131	1	0	1	0	0	0	copy fasta	RNF133	chr7	122692735	122704117
RNF133_chr7_122692735_122704117	0/0	c0008	1131	1	1	0	0	0	0	copy fasta	RNF133	chr7	122692735	122704117
RNF133_chr7_122692735_122704117	0/0	c0009	1131	1	1	0	0	0	0	copy fasta	RNF133	chr7	122692735	122704117
RNF135_chr17_30966039_31004911	1/1	c0001	1299	182	14	58	70	12	26	copy fasta	RNF135	chr17	30966039	31004911
RNF135_chr17_30966039_31004911	0/0	c0002	1299	62	54	8	0	0	0	copy fasta	RNF135	chr17	30966039	31004911
RNF135_chr17_30966039_31004911	0/0	c0003	1299	5	5	0	0	0	0	copy fasta	RNF135	chr17	30966039	31004911
RNF135_chr17_30966039_31004911	0/0	c0004	1299	4	1	1	0	2	0	copy fasta	RNF135	chr17	30966039	31004911
RNF135_chr17_30966039_31004911	0/0	c0005	1299	4	4	0	0	0	0	copy fasta	RNF135	chr17	30966039	31004911
RNF135_chr17_30966039_31004911	0/0	c0006	1299	4	4	0	0	0	0	copy fasta	RNF135	chr17	30966039	31004911
RNF135_chr17_30966039_31004911	0/0	c0007	1299	3	3	0	0	0	0	copy fasta	RNF135	chr17	30966039	31004911
RNF135_chr17_30966039_31004911	0/0	c0008	1299	1	0	1	0	0	0	copy fasta	RNF135	chr17	30966039	31004911
RNF135_chr17_30966039_31004911	0/0	c0009	1299	1	1	0	0	0	0	copy fasta	RNF135	chr17	30966039	31004911
RNF138_chr18_32086874_32136561	1/1	c0001	738	344	75	61	154	14	38	copy fasta	RNF138	chr18	32086874	32136561
RNF138_chr18_32086874_32136561	0/0	c0002	738	9	7	2	0	0	0	copy fasta	RNF138	chr18	32086874	32136561
RNF138_chr18_32086874_32136561	0/0	c0003	738	6	0	0	6	0	0	copy fasta	RNF138	chr18	32086874	32136561
RNF138_chr18_32086874_32136561	0/0	c0004	738	2	2	0	0	0	0	copy fasta	RNF138	chr18	32086874	32136561
RNF138_chr18_32086874_32136561	0/0	c0005	738	1	0	1	0	0	0	copy fasta	RNF138	chr18	32086874	32136561
RNF139_chr8_124469880_124493618	1/0	c0001	1995	192	27	43	99	9	13	copy fasta	RNF139	chr8	124469880	124493618
RNF139_chr8_124469880_124493618	0/1	c0002	1995	143	49	26	50	4	13	copy fasta	RNF139	chr8	124469880	124493618
RNF139_chr8_124469880_124493618	0/0	c0003	1995	65	11	2	35	1	16	copy fasta	RNF139	chr8	124469880	124493618
RNF139_chr8_124469880_124493618	0/0	c0004	181	1	1	0	0	0	0	copy fasta	RNF139	chr8	124469880	124493618
RNF139_chr8_124469880_124493618	0/0	c0005	1955	1	0	0	1	0	0	copy fasta	RNF139	chr8	124469880	124493618
RNF139_chr8_124469880_124493618	0/0	c0006	1995	1	0	0	1	0	0	copy fasta	RNF139	chr8	124469880	124493618
RNF139_chr8_124469880_124493618	0/0	c0007	1995	1	0	0	1	0	0	copy fasta	RNF139	chr8	124469880	124493618
RNF139_chr8_124469880_124493618	0/0	c0008	1995	1	1	0	0	0	0	copy fasta	RNF139	chr8	124469880	124493618
RNF139_chr8_124469880_124493618	0/0	c0009	1995	1	0	1	0	0	0	copy fasta	RNF139	chr8	124469880	124493618
RNF139_chr8_124469880_124493618	0/0	c0010	1995	1	0	0	1	0	0	copy fasta	RNF139	chr8	124469880	124493618
RNF139_chr8_124469880_124493618	0/0	c0011	1995	1	1	0	0	0	0	copy fasta	RNF139	chr8	124469880	124493618
RNF13_chr3_149808215_149967139	0/1	c0001	1146	164	27	46	61	11	18	copy fasta	RNF13	chr3	149808215	149967139
RNF13_chr3_149808215_149967139	1/0	c0002	1146	106	46	16	28	5	10	copy fasta	RNF13	chr3	149808215	149967139
RNF13_chr3_149808215_149967139	0/0	c0003	1146	3	3	0	0	0	0	copy fasta	RNF13	chr3	149808215	149967139
RNF13_chr3_149808215_149967139	0/0	c0004	1146	2	2	0	0	0	0	copy fasta	RNF13	chr3	149808215	149967139
RNF13_chr3_149808215_149967139	0/0	c0005	1146	2	2	0	0	0	0	copy fasta	RNF13	chr3	149808215	149967139