JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RNF13_chr3_149808215_149967139	0/0	c0006	1146	1	0	0	1	0	0	copy fasta	RNF13	chr3	149808215	149967139
RNF13_chr3_149808215_149967139	0/0	c0007	1146	1	1	0	0	0	0	copy fasta	RNF13	chr3	149808215	149967139
RNF13_chr3_149808215_149967139	0/0	c0008	1146	1	1	0	0	0	0	copy fasta	RNF13	chr3	149808215	149967139
RNF141_chr11_10506673_10546187	1/0	c0001	693	257	95	46	79	11	25	copy fasta	RNF141	chr11	10506673	10546187
RNF141_chr11_10506673_10546187	0/1	c0002	693	112	1	22	66	5	17	copy fasta	RNF141	chr11	10506673	10546187
RNF141_chr11_10506673_10546187	0/0	c0003	693	3	0	0	3	0	0	copy fasta	RNF141	chr11	10506673	10546187
RNF141_chr11_10506673_10546187	0/0	c0004	693	1	1	0	0	0	0	copy fasta	RNF141	chr11	10506673	10546187
RNF141_chr11_10506673_10546187	0/0	c0005	693	1	1	0	0	0	0	copy fasta	RNF141	chr11	10506673	10546187
RNF144A_chr2_6912412_7049179	0/0	c0001	879	182	66	38	55	8	15	copy fasta	RNF144A	chr2	6912412	7049179
RNF144A_chr2_6912412_7049179	0/1	c0002	879	75	15	18	21	5	15	copy fasta	RNF144A	chr2	6912412	7049179
RNF144A_chr2_6912412_7049179	1/0	c0003	879	47	10	12	19	1	4	copy fasta	RNF144A	chr2	6912412	7049179
RNF144A_chr2_6912412_7049179	0/0	c0004	879	2	0	0	2	0	0	copy fasta	RNF144A	chr2	6912412	7049179
RNF144A_chr2_6912412_7049179	0/0	c0005	879	1	0	0	1	0	0	copy fasta	RNF144A	chr2	6912412	7049179
RNF144A_chr2_6912412_7049179	0/0	c0006	879	1	0	0	1	0	0	copy fasta	RNF144A	chr2	6912412	7049179
RNF144A_chr2_6912412_7049179	0/0	c0007	879	1	1	0	0	0	0	copy fasta	RNF144A	chr2	6912412	7049179
RNF144A_chr2_6912412_7049179	0/0	c0008	879	1	0	0	1	0	0	copy fasta	RNF144A	chr2	6912412	7049179
RNF144B_chr6_18382350_18473870	1/1	c0001	912	380	90	81	149	16	42	copy fasta	RNF144B	chr6	18382350	18473870
RNF144B_chr6_18382350_18473870	0/0	c0002	912	2	0	0	0	2	0	copy fasta	RNF144B	chr6	18382350	18473870
RNF144B_chr6_18382350_18473870	0/0	c0003	912	1	0	1	0	0	0	copy fasta	RNF144B	chr6	18382350	18473870
RNF144B_chr6_18382350_18473870	0/0	c0004	912	1	0	0	1	0	0	copy fasta	RNF144B	chr6	18382350	18473870
RNF144B_chr6_18382350_18473870	0/0	c0005	912	1	0	0	1	0	0	copy fasta	RNF144B	chr6	18382350	18473870
RNF144B_chr6_18382350_18473870	0/0	c0006	912	1	0	0	1	0	0	copy fasta	RNF144B	chr6	18382350	18473870
RNF145_chr5_159152409_159214553	1/1	c0001	1992	385	72	73	183	15	40	copy fasta	RNF145	chr5	159152409	159214553
RNF145_chr5_159152409_159214553	0/0	c0002	1992	4	4	0	0	0	0	copy fasta	RNF145	chr5	159152409	159214553
RNF145_chr5_159152409_159214553	0/0	c0003	1992	2	0	1	0	1	0	copy fasta	RNF145	chr5	159152409	159214553
RNF145_chr5_159152409_159214553	0/0	c0004	1992	1	1	0	0	0	0	copy fasta	RNF145	chr5	159152409	159214553
RNF145_chr5_159152409_159214553	0/0	c0005	1992	1	1	0	0	0	0	copy fasta	RNF145	chr5	159152409	159214553
RNF145_chr5_159152409_159214553	0/0	c0006	1992	1	0	0	1	0	0	copy fasta	RNF145	chr5	159152409	159214553
RNF146_chr6_127261864_127293562	1/1	c0001	1080	367	87	61	159	14	44	copy fasta	RNF146	chr6	127261864	127293562
RNF146_chr6_127261864_127293562	0/0	c0002	1080	5	5	0	0	0	0	copy fasta	RNF146	chr6	127261864	127293562
RNF146_chr6_127261864_127293562	0/0	c0003	1080	2	1	1	0	0	0	copy fasta	RNF146	chr6	127261864	127293562
RNF146_chr6_127261864_127293562	0/0	c0004	1080	2	0	0	2	0	0	copy fasta	RNF146	chr6	127261864	127293562
RNF146_chr6_127261864_127293562	0/0	c0005	1080	1	0	0	1	0	0	copy fasta	RNF146	chr6	127261864	127293562
RNF146_chr6_127261864_127293562	0/0	c0006	1056	1	1	0	0	0	0	copy fasta	RNF146	chr6	127261864	127293562
RNF148_chr7_122696668_122707922	1/1	c0001	918	410	86	75	194	12	41	copy fasta	RNF148	chr7	122696668	122707922
RNF148_chr7_122696668_122707922	0/0	c0002	918	6	2	4	0	0	0	copy fasta	RNF148	chr7	122696668	122707922
RNF148_chr7_122696668_122707922	0/0	c0003	918	3	0	0	3	0	0	copy fasta	RNF148	chr7	122696668	122707922
RNF148_chr7_122696668_122707922	0/0	c0004	918	2	2	0	0	0	0	copy fasta	RNF148	chr7	122696668	122707922
RNF148_chr7_122696668_122707922	0/0	c0005	918	1	1	0	0	0	0	copy fasta	RNF148	chr7	122696668	122707922
RNF148_chr7_122696668_122707922	0/0	c0006	918	1	0	1	0	0	0	copy fasta	RNF148	chr7	122696668	122707922
RNF148_chr7_122696668_122707922	0/0	c0007	918	1	0	0	1	0	0	copy fasta	RNF148	chr7	122696668	122707922
RNF148_chr7_122696668_122707922	0/0	c0008	918	1	0	0	1	0	0	copy fasta	RNF148	chr7	122696668	122707922
RNF148_chr7_122696668_122707922	0/0	c0009	918	1	1	0	0	0	0	copy fasta	RNF148	chr7	122696668	122707922
RNF148_chr7_122696668_122707922	0/0	c0010	918	1	0	0	0	0	1	copy fasta	RNF148	chr7	122696668	122707922
RNF148_chr7_122696668_122707922	0/0	c0011	918	1	1	0	0	0	0	copy fasta	RNF148	chr7	122696668	122707922
RNF148_chr7_122696668_122707922	0/0	c0012	918	1	0	0	1	0	0	copy fasta	RNF148	chr7	122696668	122707922
RNF148_chr7_122696668_122707922	0/0	c0013	918	1	0	0	1	0	0	copy fasta	RNF148	chr7	122696668	122707922
RNF148_chr7_122696668_122707922	0/0	c0014	918	1	1	0	0	0	0	copy fasta	RNF148	chr7	122696668	122707922
RNF148_chr7_122696668_122707922	0/0	c0015	918	1	0	0	1	0	0	copy fasta	RNF148	chr7	122696668	122707922
RNF149_chr2_101270601_101313701	0/0	c0001	1203	181	18	31	94	13	25	copy fasta	RNF149	chr2	101270601	101313701