JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RNF149_chr2_101270601_101313701	0/0	c0002	1203	139	39	23	63	2	12	copy fasta	RNF149	chr2	101270601	101313701
RNF149_chr2_101270601_101313701	0/1	c0003	1203	46	30	8	0	1	6	copy fasta	RNF149	chr2	101270601	101313701
RNF149_chr2_101270601_101313701	0/0	c0004	1203	4	4	0	0	0	0	copy fasta	RNF149	chr2	101270601	101313701
RNF149_chr2_101270601_101313701	0/0	c0005	1203	3	0	2	1	0	0	copy fasta	RNF149	chr2	101270601	101313701
RNF149_chr2_101270601_101313701	1/0	c0006	1203	1	0	0	0	0	0	copy fasta	RNF149	chr2	101270601	101313701
RNF149_chr2_101270601_101313701	0/0	c0007	1203	1	1	0	0	0	0	copy fasta	RNF149	chr2	101270601	101313701
RNF149_chr2_101270601_101313701	0/0	c0008	1203	1	0	0	1	0	0	copy fasta	RNF149	chr2	101270601	101313701
RNF149_chr2_101270601_101313701	0/0	c0009	1203	1	0	0	1	0	0	copy fasta	RNF149	chr2	101270601	101313701
RNF149_chr2_101270601_101313701	0/0	c0010	1203	1	0	0	0	0	1	copy fasta	RNF149	chr2	101270601	101313701
RNF14_chr5_141964105_141995292	1/1	c0001	1425	272	82	77	59	12	40	copy fasta	RNF14	chr5	141964105	141995292
RNF14_chr5_141964105_141995292	0/0	c0002	1425	2	2	0	0	0	0	copy fasta	RNF14	chr5	141964105	141995292
RNF14_chr5_141964105_141995292	0/0	c0003	1425	2	1	1	0	0	0	copy fasta	RNF14	chr5	141964105	141995292
RNF14_chr5_141964105_141995292	0/0	c0004	1425	2	0	2	0	0	0	copy fasta	RNF14	chr5	141964105	141995292
RNF14_chr5_141964105_141995292	0/0	c0005	1425	2	2	0	0	0	0	copy fasta	RNF14	chr5	141964105	141995292
RNF14_chr5_141964105_141995292	0/0	c0006	1425	1	1	0	0	0	0	copy fasta	RNF14	chr5	141964105	141995292
RNF14_chr5_141964105_141995292	0/0	c0007	1425	1	1	0	0	0	0	copy fasta	RNF14	chr5	141964105	141995292
RNF14_chr5_141964105_141995292	0/0	c0008	1425	1	1	0	0	0	0	copy fasta	RNF14	chr5	141964105	141995292
RNF14_chr5_141964105_141995292	0/0	c0009	1425	1	0	0	1	0	0	copy fasta	RNF14	chr5	141964105	141995292
RNF150_chr4_140854807_141138469	1/1	c0001	1317	169	61	36	38	10	22	copy fasta	RNF150	chr4	140854807	141138469
RNF150_chr4_140854807_141138469	0/0	c0002	1317	8	7	1	0	0	0	copy fasta	RNF150	chr4	140854807	141138469
RNF150_chr4_140854807_141138469	0/0	c0003	1317	3	3	0	0	0	0	copy fasta	RNF150	chr4	140854807	141138469
RNF150_chr4_140854807_141138469	0/0	c0004	1317	1	0	1	0	0	0	copy fasta	RNF150	chr4	140854807	141138469
RNF150_chr4_140854807_141138469	0/0	c0005	1317	1	0	0	1	0	0	copy fasta	RNF150	chr4	140854807	141138469
RNF150_chr4_140854807_141138469	0/0	c0006	1317	1	1	0	0	0	0	copy fasta	RNF150	chr4	140854807	141138469
RNF150_chr4_140854807_141138469	0/0	c0007	1317	1	0	0	1	0	0	copy fasta	RNF150	chr4	140854807	141138469
RNF151_chr16_1961856_1973949	1/1	c0001	738	391	78	75	174	17	45	copy fasta	RNF151	chr16	1961856	1973949
RNF151_chr16_1961856_1973949	0/0	c0002	738	17	12	0	4	0	1	copy fasta	RNF151	chr16	1961856	1973949
RNF151_chr16_1961856_1973949	0/0	c0003	738	7	4	2	0	0	1	copy fasta	RNF151	chr16	1961856	1973949
RNF151_chr16_1961856_1973949	0/0	c0004	738	3	0	0	3	0	0	copy fasta	RNF151	chr16	1961856	1973949
RNF151_chr16_1961856_1973949	0/0	c0005	738	2	0	0	2	0	0	copy fasta	RNF151	chr16	1961856	1973949
RNF151_chr16_1961856_1973949	0/0	c0006	738	2	0	0	0	0	2	copy fasta	RNF151	chr16	1961856	1973949
RNF151_chr16_1961856_1973949	0/0	c0007	738	2	2	0	0	0	0	copy fasta	RNF151	chr16	1961856	1973949
RNF151_chr16_1961856_1973949	0/0	c0008	738	2	0	2	0	0	0	copy fasta	RNF151	chr16	1961856	1973949
RNF151_chr16_1961856_1973949	0/0	c0009	738	1	0	0	1	0	0	copy fasta	RNF151	chr16	1961856	1973949
RNF151_chr16_1961856_1973949	0/0	c0010	738	1	1	0	0	0	0	copy fasta	RNF151	chr16	1961856	1973949
RNF151_chr16_1961856_1973949	0/0	c0011	738	1	0	0	0	0	1	copy fasta	RNF151	chr16	1961856	1973949
RNF151_chr16_1961856_1973949	0/0	c0012	738	1	0	0	0	1	0	copy fasta	RNF151	chr16	1961856	1973949
RNF151_chr16_1961856_1973949	0/0	c0013	738	1	0	1	0	0	0	copy fasta	RNF151	chr16	1961856	1973949
RNF151_chr16_1961856_1973949	0/0	c0014	738	1	1	0	0	0	0	copy fasta	RNF151	chr16	1961856	1973949
RNF152_chr18_61803067_61898007	1/0	c0001	612	247	59	43	112	11	21	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	c0002	612	55	24	8	15	2	6	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/1	c0003	612	3	1	0	0	1	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	c0004	612	1	1	0	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	c0005	612	1	1	0	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	c0006	612	1	0	0	0	0	1	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	c0007	612	1	0	1	0	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF152_chr18_61803067_61898007	0/0	c0008	612	1	0	0	1	0	0	copy fasta	RNF152	chr18	61803067	61898007
RNF157_chr17_76137474_76245493	1/0	c0001	2040	99	31	23	31	3	10	copy fasta	RNF157	chr17	76137474	76245493
RNF157_chr17_76137474_76245493	0/0	c0002	2040	50	21	15	12	1	1	copy fasta	RNF157	chr17	76137474	76245493
RNF157_chr17_76137474_76245493	0/0	c0003	2040	32	3	9	12	3	5	copy fasta	RNF157	chr17	76137474	76245493