JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RNF157_chr17_76137474_76245493	0/0	c0004	2040	26	14	4	5	1	2	copy fasta	RNF157	chr17	76137474	76245493
RNF157_chr17_76137474_76245493	0/0	c0005	2040	3	3	0	0	0	0	copy fasta	RNF157	chr17	76137474	76245493
RNF157_chr17_76137474_76245493	0/0	c0006	2040	3	3	0	0	0	0	copy fasta	RNF157	chr17	76137474	76245493
RNF157_chr17_76137474_76245493	0/0	c0007	2040	2	2	0	0	0	0	copy fasta	RNF157	chr17	76137474	76245493
RNF157_chr17_76137474_76245493	0/0	c0008	2040	2	0	0	0	0	2	copy fasta	RNF157	chr17	76137474	76245493
RNF157_chr17_76137474_76245493	0/0	c0009	2040	2	2	0	0	0	0	copy fasta	RNF157	chr17	76137474	76245493
RNF157_chr17_76137474_76245493	0/0	c0010	2040	2	2	0	0	0	0	copy fasta	RNF157	chr17	76137474	76245493
RNF157_chr17_76137474_76245493	0/0	c0011	2040	2	2	0	0	0	0	copy fasta	RNF157	chr17	76137474	76245493
RNF157_chr17_76137474_76245493	0/0	c0012	2040	1	1	0	0	0	0	copy fasta	RNF157	chr17	76137474	76245493
RNF157_chr17_76137474_76245493	0/0	c0013	2040	1	0	0	1	0	0	copy fasta	RNF157	chr17	76137474	76245493
RNF157_chr17_76137474_76245493	0/0	c0014	2040	1	0	1	0	0	0	copy fasta	RNF157	chr17	76137474	76245493
RNF157_chr17_76137474_76245493	0/0	c0015	2040	1	0	0	1	0	0	copy fasta	RNF157	chr17	76137474	76245493
RNF157_chr17_76137474_76245493	0/0	c0016	2040	1	1	0	0	0	0	copy fasta	RNF157	chr17	76137474	76245493
RNF157_chr17_76137474_76245493	0/0	c0017	2040	1	1	0	0	0	0	copy fasta	RNF157	chr17	76137474	76245493
RNF157_chr17_76137474_76245493	0/1	c0018	2040	1	0	0	0	0	0	copy fasta	RNF157	chr17	76137474	76245493
RNF157_chr17_76137474_76245493	0/0	c0019	2040	1	0	1	0	0	0	copy fasta	RNF157	chr17	76137474	76245493
RNF157_chr17_76137474_76245493	0/0	c0020	2040	1	0	1	0	0	0	copy fasta	RNF157	chr17	76137474	76245493
RNF157_chr17_76137474_76245493	0/0	c0021	2040	1	0	0	1	0	0	copy fasta	RNF157	chr17	76137474	76245493
RNF157_chr17_76137474_76245493	0/0	c0022	2040	1	0	0	1	0	0	copy fasta	RNF157	chr17	76137474	76245493
RNF166_chr16_88691501_88711408	1/1	c0001	714	262	71	42	109	7	31	copy fasta	RNF166	chr16	88691501	88711408
RNF166_chr16_88691501_88711408	0/0	c0002	714	172	24	43	77	11	17	copy fasta	RNF166	chr16	88691501	88711408
RNF166_chr16_88691501_88711408	0/0	c0003	714	4	3	1	0	0	0	copy fasta	RNF166	chr16	88691501	88711408
RNF166_chr16_88691501_88711408	0/0	c0004	714	1	0	0	1	0	0	copy fasta	RNF166	chr16	88691501	88711408
RNF166_chr16_88691501_88711408	0/0	c0005	714	1	0	0	1	0	0	copy fasta	RNF166	chr16	88691501	88711408
RNF167_chr17_4935268_4950222	1/1	c0001	1053	425	86	77	199	14	47	copy fasta	RNF167	chr17	4935268	4950222
RNF167_chr17_4935268_4950222	0/0	c0002	1053	7	3	4	0	0	0	copy fasta	RNF167	chr17	4935268	4950222
RNF167_chr17_4935268_4950222	0/0	c0003	1053	1	0	0	1	0	0	copy fasta	RNF167	chr17	4935268	4950222
RNF167_chr17_4935268_4950222	0/0	c0004	1053	1	1	0	0	0	0	copy fasta	RNF167	chr17	4935268	4950222
RNF167_chr17_4935268_4950222	0/0	c0005	1053	1	0	0	1	0	0	copy fasta	RNF167	chr17	4935268	4950222
RNF167_chr17_4935268_4950222	0/0	c0006	1045	1	0	1	0	0	0	copy fasta	RNF167	chr17	4935268	4950222
RNF167_chr17_4935268_4950222	0/0	c0007	1053	1	1	0	0	0	0	copy fasta	RNF167	chr17	4935268	4950222
RNF167_chr17_4935268_4950222	0/0	c0008	1053	1	0	0	0	0	1	copy fasta	RNF167	chr17	4935268	4950222
RNF167_chr17_4935268_4950222	0/0	c0009	1053	1	0	0	1	0	0	copy fasta	RNF167	chr17	4935268	4950222
RNF167_chr17_4935268_4950222	0/0	c0010	1053	1	1	0	0	0	0	copy fasta	RNF167	chr17	4935268	4950222
RNF168_chr3_196463783_196508768	1/0	c0001	1716	188	46	25	91	7	18	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/1	c0002	1716	117	15	38	34	11	18	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	c0003	1716	8	8	0	0	0	0	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	c0004	1716	7	7	0	0	0	0	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	c0005	1716	6	0	0	2	0	4	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	c0006	1716	5	4	1	0	0	0	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	c0007	1716	4	3	1	0	0	0	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	c0008	1716	3	3	0	0	0	0	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	c0009	1716	2	2	0	0	0	0	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	c0010	1716	2	2	0	0	0	0	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	c0011	1716	2	0	0	2	0	0	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	c0012	1716	2	2	0	0	0	0	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	c0013	1716	1	0	1	0	0	0	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	c0014	1716	1	0	1	0	0	0	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	c0015	1716	1	0	0	1	0	0	copy fasta	RNF168	chr3	196463783	196508768
RNF168_chr3_196463783_196508768	0/0	c0016	1716	1	0	1	0	0	0	copy fasta	RNF168	chr3	196463783	196508768