JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RNF169_chr11_74743849_74847413	1/1	c0001	2127	233	63	41	97	9	21	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	c0002	2127	98	16	13	49	8	12	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	c0003	2127	8	8	0	0	0	0	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	c0004	2127	2	2	0	0	0	0	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	c0005	2127	2	0	0	0	0	2	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	c0006	2127	2	1	0	1	0	0	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	c0007	2127	1	1	0	0	0	0	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	c0008	2127	1	0	0	0	1	0	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	c0009	2127	1	1	0	0	0	0	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	c0010	2127	1	0	0	1	0	0	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	c0011	2127	1	0	0	1	0	0	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	c0012	2127	1	0	0	0	0	1	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	c0013	2127	1	0	0	1	0	0	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	c0014	2127	1	1	0	0	0	0	copy fasta	RNF169	chr11	74743849	74847413
RNF169_chr11_74743849_74847413	0/0	c0015	2127	1	1	0	0	0	0	copy fasta	RNF169	chr11	74743849	74847413
RNF170_chr8_42848301_42901605	1/1	c0001	777	192	62	53	53	2	20	copy fasta	RNF170	chr8	42848301	42901605
RNF170_chr8_42848301_42901605	0/0	c0002	777	15	14	1	0	0	0	copy fasta	RNF170	chr8	42848301	42901605
RNF170_chr8_42848301_42901605	0/0	c0003	777	1	0	0	1	0	0	copy fasta	RNF170	chr8	42848301	42901605
RNF175_chr4_153705160_153765024	0/0	c0001	987	227	66	30	102	8	21	copy fasta	RNF175	chr4	153705160	153765024
RNF175_chr4_153705160_153765024	0/0	c0002	987	67	0	12	49	4	2	copy fasta	RNF175	chr4	153705160	153765024
RNF175_chr4_153705160_153765024	0/0	c0003	987	58	3	4	44	0	7	copy fasta	RNF175	chr4	153705160	153765024
RNF175_chr4_153705160_153765024	0/0	c0004	987	17	0	9	0	2	6	copy fasta	RNF175	chr4	153705160	153765024
RNF175_chr4_153705160_153765024	1/0	c0005	987	12	9	1	0	0	1	copy fasta	RNF175	chr4	153705160	153765024
RNF175_chr4_153705160_153765024	0/1	c0006	987	3	0	1	0	0	1	copy fasta	RNF175	chr4	153705160	153765024
RNF175_chr4_153705160_153765024	0/0	c0007	987	2	2	0	0	0	0	copy fasta	RNF175	chr4	153705160	153765024
RNF175_chr4_153705160_153765024	0/0	c0008	987	2	0	0	0	0	2	copy fasta	RNF175	chr4	153705160	153765024
RNF175_chr4_153705160_153765024	0/0	c0009	987	1	1	0	0	0	0	copy fasta	RNF175	chr4	153705160	153765024
RNF175_chr4_153705160_153765024	0/0	c0010	987	1	0	1	0	0	0	copy fasta	RNF175	chr4	153705160	153765024
RNF175_chr4_153705160_153765024	0/0	c0011	987	1	1	0	0	0	0	copy fasta	RNF175	chr4	153705160	153765024
RNF175_chr4_153705160_153765024	0/0	c0012	987	1	1	0	0	0	0	copy fasta	RNF175	chr4	153705160	153765024
RNF175_chr4_153705160_153765024	0/0	c0013	987	1	0	0	1	0	0	copy fasta	RNF175	chr4	153705160	153765024
RNF175_chr4_153705160_153765024	0/0	c0014	987	1	1	0	0	0	0	copy fasta	RNF175	chr4	153705160	153765024
RNF17_chr13_24759169_24884921	0/0	c0001	4872	110	7	18	69	1	15	copy fasta	RNF17	chr13	24759169	24884921
RNF17_chr13_24759169_24884921	0/1	c0002	4872	78	29	10	20	6	12	copy fasta	RNF17	chr13	24759169	24884921
RNF17_chr13_24759169_24884921	0/0	c0003	4872	62	2	16	33	4	7	copy fasta	RNF17	chr13	24759169	24884921
RNF17_chr13_24759169_24884921	0/0	c0004	4872	36	3	9	18	4	2	copy fasta	RNF17	chr13	24759169	24884921
RNF17_chr13_24759169_24884921	0/0	c0005	4872	35	0	3	31	0	1	copy fasta	RNF17	chr13	24759169	24884921
RNF17_chr13_24759169_24884921	0/0	c0006	4872	22	7	10	0	1	4	copy fasta	RNF17	chr13	24759169	24884921
RNF17_chr13_24759169_24884921	0/0	c0007	4872	18	15	3	0	0	0	copy fasta	RNF17	chr13	24759169	24884921
RNF17_chr13_24759169_24884921	1/0	c0008	4872	18	6	0	11	0	0	copy fasta	RNF17	chr13	24759169	24884921
RNF17_chr13_24759169_24884921	0/0	c0009	4872	7	5	2	0	0	0	copy fasta	RNF17	chr13	24759169	24884921
RNF17_chr13_24759169_24884921	0/0	c0010	4872	5	4	1	0	0	0	copy fasta	RNF17	chr13	24759169	24884921
RNF17_chr13_24759169_24884921	0/0	c0011	4872	4	0	0	4	0	0	copy fasta	RNF17	chr13	24759169	24884921
RNF17_chr13_24759169_24884921	0/0	c0012	4872	4	4	0	0	0	0	copy fasta	RNF17	chr13	24759169	24884921
RNF17_chr13_24759169_24884921	0/0	c0013	4872	4	3	1	0	0	0	copy fasta	RNF17	chr13	24759169	24884921
RNF17_chr13_24759169_24884921	0/0	c0014	4872	4	0	0	4	0	0	copy fasta	RNF17	chr13	24759169	24884921
RNF17_chr13_24759169_24884921	0/0	c0015	4872	4	4	0	0	0	0	copy fasta	RNF17	chr13	24759169	24884921
RNF17_chr13_24759169_24884921	0/0	c0016	4872	2	2	0	0	0	0	copy fasta	RNF17	chr13	24759169	24884921
RNF17_chr13_24759169_24884921	0/0	c0017	4872	2	0	0	2	0	0	copy fasta	RNF17	chr13	24759169	24884921
RNF17_chr13_24759169_24884921	0/0	c0018	4872	1	0	0	0	0	1	copy fasta	RNF17	chr13	24759169	24884921