JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ATAD1_chr10_87746512_87823226	1/1	c0001	1086	356	91	58	157	10	38	copy fasta	ATAD1	chr10	87746512	87823226
ATAD1_chr10_87746512_87823226	0/0	c0002	1086	2	0	0	2	0	0	copy fasta	ATAD1	chr10	87746512	87823226
ATAD1_chr10_87746512_87823226	0/0	c0003	1086	1	0	0	1	0	0	copy fasta	ATAD1	chr10	87746512	87823226
ATAD1_chr10_87746512_87823226	0/0	c0004	1086	1	1	0	0	0	0	copy fasta	ATAD1	chr10	87746512	87823226
ATAD2B_chr2_23743664_23932123	1/1	c0001	4377	192	54	40	61	14	21	copy fasta	ATAD2B	chr2	23743664	23932123
ATAD2B_chr2_23743664_23932123	0/0	c0002	4377	21	3	6	6	0	6	copy fasta	ATAD2B	chr2	23743664	23932123
ATAD2B_chr2_23743664_23932123	0/0	c0003	4377	11	11	0	0	0	0	copy fasta	ATAD2B	chr2	23743664	23932123
ATAD2B_chr2_23743664_23932123	0/0	c0004	4377	5	4	1	0	0	0	copy fasta	ATAD2B	chr2	23743664	23932123
ATAD2B_chr2_23743664_23932123	0/0	c0005	4377	3	3	0	0	0	0	copy fasta	ATAD2B	chr2	23743664	23932123
ATAD2B_chr2_23743664_23932123	0/0	c0006	4377	3	0	2	0	0	1	copy fasta	ATAD2B	chr2	23743664	23932123
ATAD2B_chr2_23743664_23932123	0/0	c0007	4377	2	0	1	0	1	0	copy fasta	ATAD2B	chr2	23743664	23932123
ATAD2B_chr2_23743664_23932123	0/0	c0008	4377	1	0	1	0	0	0	copy fasta	ATAD2B	chr2	23743664	23932123
ATAD2B_chr2_23743664_23932123	0/0	c0009	4377	1	1	0	0	0	0	copy fasta	ATAD2B	chr2	23743664	23932123
ATAD2B_chr2_23743664_23932123	0/0	c0010	4377	1	0	0	0	1	0	copy fasta	ATAD2B	chr2	23743664	23932123
ATAD2B_chr2_23743664_23932123	0/0	c0011	4377	1	0	0	1	0	0	copy fasta	ATAD2B	chr2	23743664	23932123
ATAD2B_chr2_23743664_23932123	0/0	c0012	4377	1	0	1	0	0	0	copy fasta	ATAD2B	chr2	23743664	23932123
ATAD2B_chr2_23743664_23932123	0/0	c0013	4377	1	0	0	1	0	0	copy fasta	ATAD2B	chr2	23743664	23932123
ATAD2B_chr2_23743664_23932123	0/0	c0014	4377	1	0	0	1	0	0	copy fasta	ATAD2B	chr2	23743664	23932123
ATAD2B_chr2_23743664_23932123	0/0	c0015	4377	1	0	1	0	0	0	copy fasta	ATAD2B	chr2	23743664	23932123
ATAD2B_chr2_23743664_23932123	0/0	c0016	4377	1	0	1	0	0	0	copy fasta	ATAD2B	chr2	23743664	23932123
ATAD2_chr8_123314850_123401447	1/1	c0001	4173	211	44	44	83	6	32	copy fasta	ATAD2	chr8	123314850	123401447
ATAD2_chr8_123314850_123401447	0/0	c0002	4176	11	10	1	0	0	0	copy fasta	ATAD2	chr8	123314850	123401447
ATAD2_chr8_123314850_123401447	0/0	c0003	4179	10	9	1	0	0	0	copy fasta	ATAD2	chr8	123314850	123401447
ATAD2_chr8_123314850_123401447	0/0	c0004	4179	9	9	0	0	0	0	copy fasta	ATAD2	chr8	123314850	123401447
ATAD2_chr8_123314850_123401447	0/0	c0005	4173	5	5	0	0	0	0	copy fasta	ATAD2	chr8	123314850	123401447
ATAD2_chr8_123314850_123401447	0/0	c0006	4173	4	0	4	0	0	0	copy fasta	ATAD2	chr8	123314850	123401447
ATAD2_chr8_123314850_123401447	0/0	c0007	4167	3	0	0	2	0	1	copy fasta	ATAD2	chr8	123314850	123401447
ATAD2_chr8_123314850_123401447	0/0	c0008	4179	3	3	0	0	0	0	copy fasta	ATAD2	chr8	123314850	123401447
ATAD2_chr8_123314850_123401447	0/0	c0009	4173	2	0	2	0	0	0	copy fasta	ATAD2	chr8	123314850	123401447
ATAD2_chr8_123314850_123401447	0/0	c0010	4161	2	0	2	0	0	0	copy fasta	ATAD2	chr8	123314850	123401447
ATAD2_chr8_123314850_123401447	0/0	c0011	4176	2	2	0	0	0	0	copy fasta	ATAD2	chr8	123314850	123401447
ATAD2_chr8_123314850_123401447	0/0	c0012	4173	1	0	0	0	0	1	copy fasta	ATAD2	chr8	123314850	123401447
ATAD2_chr8_123314850_123401447	0/0	c0013	4173	1	0	0	0	0	1	copy fasta	ATAD2	chr8	123314850	123401447
ATAD2_chr8_123314850_123401447	0/0	c0014	4167	1	1	0	0	0	0	copy fasta	ATAD2	chr8	123314850	123401447
ATAD2_chr8_123314850_123401447	0/0	c0015	4173	1	0	0	0	0	1	copy fasta	ATAD2	chr8	123314850	123401447
ATAD2_chr8_123314850_123401447	0/0	c0016	4173	1	0	1	0	0	0	copy fasta	ATAD2	chr8	123314850	123401447
ATAD2_chr8_123314850_123401447	0/0	c0017	4173	1	0	1	0	0	0	copy fasta	ATAD2	chr8	123314850	123401447
ATAD2_chr8_123314850_123401447	0/0	c0018	4173	1	0	0	1	0	0	copy fasta	ATAD2	chr8	123314850	123401447
ATAD2_chr8_123314850_123401447	0/0	c0019	4173	1	1	0	0	0	0	copy fasta	ATAD2	chr8	123314850	123401447
ATAD2_chr8_123314850_123401447	0/0	c0020	4173	1	0	0	1	0	0	copy fasta	ATAD2	chr8	123314850	123401447
ATAD2_chr8_123314850_123401447	0/0	c0021	4173	1	1	0	0	0	0	copy fasta	ATAD2	chr8	123314850	123401447
ATAD2_chr8_123314850_123401447	0/0	c0022	4173	1	0	0	1	0	0	copy fasta	ATAD2	chr8	123314850	123401447
ATAD2_chr8_123314850_123401447	0/0	c0023	4173	1	0	1	0	0	0	copy fasta	ATAD2	chr8	123314850	123401447
ATAD2_chr8_123314850_123401447	0/0	c0024	4176	1	0	0	1	0	0	copy fasta	ATAD2	chr8	123314850	123401447
ATAD2_chr8_123314850_123401447	0/0	c0025	4176	1	1	0	0	0	0	copy fasta	ATAD2	chr8	123314850	123401447
ATAD2_chr8_123314850_123401447	0/0	c0026	4179	1	0	0	1	0	0	copy fasta	ATAD2	chr8	123314850	123401447
ATAD2_chr8_123314850_123401447	0/0	c0027	4173	1	0	1	0	0	0	copy fasta	ATAD2	chr8	123314850	123401447
ATAD3A_chr1_1507162_1539685	0/0	c0001	1761	194	16	50	85	14	29	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	c0002	1761	86	13	11	52	0	10	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	c0003	1761	58	34	10	8	1	5	copy fasta	ATAD3A	chr1	1507162	1539685