JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RNF17_chr13_24759169_24884921	0/0	c0019	4872	1	0	0	0	0	1	copy fasta	RNF17	chr13	24759169	24884921
RNF17_chr13_24759169_24884921	0/0	c0020	4872	1	0	0	1	0	0	copy fasta	RNF17	chr13	24759169	24884921
RNF17_chr13_24759169_24884921	0/0	c0021	4872	1	1	0	0	0	0	copy fasta	RNF17	chr13	24759169	24884921
RNF17_chr13_24759169_24884921	0/0	c0022	4872	1	1	0	0	0	0	copy fasta	RNF17	chr13	24759169	24884921
RNF17_chr13_24759169_24884921	0/0	c0023	4872	1	1	0	0	0	0	copy fasta	RNF17	chr13	24759169	24884921
RNF17_chr13_24759169_24884921	0/0	c0024	4872	1	0	1	0	0	0	copy fasta	RNF17	chr13	24759169	24884921
RNF17_chr13_24759169_24884921	0/0	c0025	4872	1	1	0	0	0	0	copy fasta	RNF17	chr13	24759169	24884921
RNF17_chr13_24759169_24884921	0/0	c0026	4872	1	0	0	1	0	0	copy fasta	RNF17	chr13	24759169	24884921
RNF17_chr13_24759169_24884921	0/0	c0027	4872	1	0	0	0	0	1	copy fasta	RNF17	chr13	24759169	24884921
RNF17_chr13_24759169_24884921	0/0	c0028	4872	1	1	0	0	0	0	copy fasta	RNF17	chr13	24759169	24884921
RNF180_chr5_64160843_64377869	1/1	c0001	1779	226	66	51	68	11	28	copy fasta	RNF180	chr5	64160843	64377869
RNF180_chr5_64160843_64377869	0/0	c0002	1779	19	6	10	0	1	2	copy fasta	RNF180	chr5	64160843	64377869
RNF180_chr5_64160843_64377869	0/0	c0003	1779	1	0	0	1	0	0	copy fasta	RNF180	chr5	64160843	64377869
RNF180_chr5_64160843_64377869	0/0	c0004	1607	1	1	0	0	0	0	copy fasta	RNF180	chr5	64160843	64377869
RNF180_chr5_64160843_64377869	0/0	c0005	1779	1	1	0	0	0	0	copy fasta	RNF180	chr5	64160843	64377869
RNF180_chr5_64160843_64377869	0/0	c0006	1779	1	0	1	0	0	0	copy fasta	RNF180	chr5	64160843	64377869
RNF180_chr5_64160843_64377869	0/0	c0007	1779	1	0	0	1	0	0	copy fasta	RNF180	chr5	64160843	64377869
RNF181_chr2_85590745_85602708	1/1	c0001	462	261	39	67	105	12	36	copy fasta	RNF181	chr2	85590745	85602708
RNF181_chr2_85590745_85602708	0/0	c0002	462	122	55	5	57	1	4	copy fasta	RNF181	chr2	85590745	85602708
RNF181_chr2_85590745_85602708	0/0	c0003	462	13	2	6	1	1	3	copy fasta	RNF181	chr2	85590745	85602708
RNF181_chr2_85590745_85602708	0/0	c0004	462	1	0	0	1	0	0	copy fasta	RNF181	chr2	85590745	85602708
RNF181_chr2_85590745_85602708	0/0	c0005	462	1	0	0	0	0	1	copy fasta	RNF181	chr2	85590745	85602708
RNF182_chr6_13919952_13985310	1/1	c0001	744	340	86	55	154	8	35	copy fasta	RNF182	chr6	13919952	13985310
RNF182_chr6_13919952_13985310	0/0	c0002	744	7	6	1	0	0	0	copy fasta	RNF182	chr6	13919952	13985310
RNF182_chr6_13919952_13985310	0/0	c0003	744	4	0	2	0	0	2	copy fasta	RNF182	chr6	13919952	13985310
RNF182_chr6_13919952_13985310	0/0	c0004	744	3	0	0	3	0	0	copy fasta	RNF182	chr6	13919952	13985310
RNF182_chr6_13919952_13985310	0/0	c0005	744	1	0	0	0	0	1	copy fasta	RNF182	chr6	13919952	13985310
RNF182_chr6_13919952_13985310	0/0	c0006	744	1	0	0	1	0	0	copy fasta	RNF182	chr6	13919952	13985310
RNF183_chr9_113292093_113308376	1/1	c0001	579	260	49	62	114	11	22	copy fasta	RNF183	chr9	113292093	113308376
RNF183_chr9_113292093_113308376	0/0	c0002	579	171	36	13	96	3	23	copy fasta	RNF183	chr9	113292093	113308376
RNF183_chr9_113292093_113308376	0/0	c0003	579	5	1	1	2	0	1	copy fasta	RNF183	chr9	113292093	113308376
RNF183_chr9_113292093_113308376	0/0	c0004	579	2	2	0	0	0	0	copy fasta	RNF183	chr9	113292093	113308376
RNF183_chr9_113292093_113308376	0/0	c0005	579	1	0	0	1	0	0	copy fasta	RNF183	chr9	113292093	113308376
RNF183_chr9_113292093_113308376	0/0	c0006	579	1	0	0	1	0	0	copy fasta	RNF183	chr9	113292093	113308376
RNF185_chr22_31155182_31212019	1/1	c0001	579	365	85	62	164	14	38	copy fasta	RNF185	chr22	31155182	31212019
RNF185_chr22_31155182_31212019	0/0	c0002	579	11	0	8	3	0	0	copy fasta	RNF185	chr22	31155182	31212019
RNF185_chr22_31155182_31212019	0/0	c0003	579	1	1	0	0	0	0	copy fasta	RNF185	chr22	31155182	31212019
RNF185_chr22_31155182_31212019	0/0	c0004	579	1	0	0	1	0	0	copy fasta	RNF185	chr22	31155182	31212019
RNF186_chr1_19809029_19820283	1/1	c0001	684	307	63	52	144	14	32	copy fasta	RNF186	chr1	19809029	19820283
RNF186_chr1_19809029_19820283	0/0	c0002	684	85	16	17	46	0	6	copy fasta	RNF186	chr1	19809029	19820283
RNF186_chr1_19809029_19820283	0/0	c0003	684	61	9	6	35	3	8	copy fasta	RNF186	chr1	19809029	19820283
RNF186_chr1_19809029_19820283	0/0	c0004	684	7	0	1	1	1	4	copy fasta	RNF186	chr1	19809029	19820283
RNF186_chr1_19809029_19820283	0/0	c0005	684	7	7	0	0	0	0	copy fasta	RNF186	chr1	19809029	19820283
RNF186_chr1_19809029_19820283	0/0	c0006	684	3	0	2	1	0	0	copy fasta	RNF186	chr1	19809029	19820283
RNF186_chr1_19809029_19820283	0/0	c0007	684	1	1	0	0	0	0	copy fasta	RNF186	chr1	19809029	19820283
RNF186_chr1_19809029_19820283	0/0	c0008	684	1	0	1	0	0	0	copy fasta	RNF186	chr1	19809029	19820283
RNF186_chr1_19809029_19820283	0/0	c0009	684	1	0	1	0	0	0	copy fasta	RNF186	chr1	19809029	19820283
RNF186_chr1_19809029_19820283	0/0	c0010	684	1	1	0	0	0	0	copy fasta	RNF186	chr1	19809029	19820283
RNF186_chr1_19809029_19820283	0/0	c0011	684	1	1	0	0	0	0	copy fasta	RNF186	chr1	19809029	19820283
RNF186_chr1_19809029_19820283	0/0	c0012	684	1	0	0	1	0	0	copy fasta	RNF186	chr1	19809029	19820283