JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RNF187_chr1_228482382_228501188	1/1	c0001	708	389	91	75	174	14	33	copy fasta	RNF187	chr1	228482382	228501188
RNF187_chr1_228482382_228501188	0/0	c0002	708	23	3	4	11	0	5	copy fasta	RNF187	chr1	228482382	228501188
RNF187_chr1_228482382_228501188	0/0	c0003	708	4	4	0	0	0	0	copy fasta	RNF187	chr1	228482382	228501188
RNF187_chr1_228482382_228501188	0/0	c0004	708	2	0	0	2	0	0	copy fasta	RNF187	chr1	228482382	228501188
RNF187_chr1_228482382_228501188	0/0	c0005	708	2	0	0	2	0	0	copy fasta	RNF187	chr1	228482382	228501188
RNF187_chr1_228482382_228501188	0/0	c0006	708	1	0	1	0	0	0	copy fasta	RNF187	chr1	228482382	228501188
RNF187_chr1_228482382_228501188	0/0	c0007	708	1	0	0	1	0	0	copy fasta	RNF187	chr1	228482382	228501188
RNF19A_chr8_100252067_100314953	1/1	c0001	2517	343	80	62	149	12	38	copy fasta	RNF19A	chr8	100252067	100314953
RNF19A_chr8_100252067_100314953	0/0	c0002	2517	3	3	0	0	0	0	copy fasta	RNF19A	chr8	100252067	100314953
RNF19A_chr8_100252067_100314953	0/0	c0003	2517	1	0	0	1	0	0	copy fasta	RNF19A	chr8	100252067	100314953
RNF19A_chr8_100252067_100314953	0/0	c0004	2517	1	1	0	0	0	0	copy fasta	RNF19A	chr8	100252067	100314953
RNF19A_chr8_100252067_100314953	0/0	c0005	2517	1	0	0	1	0	0	copy fasta	RNF19A	chr8	100252067	100314953
RNF19A_chr8_100252067_100314953	0/0	c0006	2517	1	0	0	1	0	0	copy fasta	RNF19A	chr8	100252067	100314953
RNF19B_chr1_32931449_32969809	0/1	c0001	2196	226	82	42	72	5	24	copy fasta	RNF19B	chr1	32931449	32969809
RNF19B_chr1_32931449_32969809	0/0	c0002	2196	70	2	10	48	3	7	copy fasta	RNF19B	chr1	32931449	32969809
RNF19B_chr1_32931449_32969809	0/0	c0003	2196	14	2	7	0	0	5	copy fasta	RNF19B	chr1	32931449	32969809
RNF19B_chr1_32931449_32969809	0/0	c0004	2196	13	0	0	12	0	1	copy fasta	RNF19B	chr1	32931449	32969809
RNF19B_chr1_32931449_32969809	0/0	c0005	2202	3	3	0	0	0	0	copy fasta	RNF19B	chr1	32931449	32969809
RNF19B_chr1_32931449_32969809	0/0	c0006	2196	1	0	0	0	0	1	copy fasta	RNF19B	chr1	32931449	32969809
RNF19B_chr1_32931449_32969809	1/0	c0007	2196	1	0	0	0	0	0	copy fasta	RNF19B	chr1	32931449	32969809
RNF19B_chr1_32931449_32969809	0/0	c0008	2196	1	1	0	0	0	0	copy fasta	RNF19B	chr1	32931449	32969809
RNF19B_chr1_32931449_32969809	0/0	c0009	2196	1	0	1	0	0	0	copy fasta	RNF19B	chr1	32931449	32969809
RNF207_chr1_6201119_6226299	1/1	c0001	1905	182	25	36	91	8	20	copy fasta	RNF207	chr1	6201119	6226299
RNF207_chr1_6201119_6226299	0/0	c0002	1905	70	1	16	37	7	9	copy fasta	RNF207	chr1	6201119	6226299
RNF207_chr1_6201119_6226299	0/0	c0003	1905	21	18	2	0	0	1	copy fasta	RNF207	chr1	6201119	6226299
RNF207_chr1_6201119_6226299	0/0	c0004	1905	18	8	0	8	0	2	copy fasta	RNF207	chr1	6201119	6226299
RNF207_chr1_6201119_6226299	0/0	c0005	1905	12	9	3	0	0	0	copy fasta	RNF207	chr1	6201119	6226299
RNF207_chr1_6201119_6226299	0/0	c0006	1905	10	5	0	4	0	1	copy fasta	RNF207	chr1	6201119	6226299
RNF207_chr1_6201119_6226299	0/0	c0007	1905	8	8	0	0	0	0	copy fasta	RNF207	chr1	6201119	6226299
RNF207_chr1_6201119_6226299	0/0	c0008	1905	8	7	1	0	0	0	copy fasta	RNF207	chr1	6201119	6226299
RNF207_chr1_6201119_6226299	0/0	c0009	1905	5	2	0	3	0	0	copy fasta	RNF207	chr1	6201119	6226299
RNF207_chr1_6201119_6226299	0/0	c0010	1905	4	0	0	4	0	0	copy fasta	RNF207	chr1	6201119	6226299
RNF207_chr1_6201119_6226299	0/0	c0011	1905	4	0	2	0	1	1	copy fasta	RNF207	chr1	6201119	6226299
RNF207_chr1_6201119_6226299	0/0	c0012	1905	3	3	0	0	0	0	copy fasta	RNF207	chr1	6201119	6226299
RNF207_chr1_6201119_6226299	0/0	c0013	1905	3	0	0	3	0	0	copy fasta	RNF207	chr1	6201119	6226299
RNF207_chr1_6201119_6226299	0/0	c0014	1905	2	0	0	2	0	0	copy fasta	RNF207	chr1	6201119	6226299
RNF207_chr1_6201119_6226299	0/0	c0015	1905	2	1	0	0	0	1	copy fasta	RNF207	chr1	6201119	6226299
RNF207_chr1_6201119_6226299	0/0	c0016	1905	2	2	0	0	0	0	copy fasta	RNF207	chr1	6201119	6226299
RNF207_chr1_6201119_6226299	0/0	c0017	1905	2	0	0	0	0	2	copy fasta	RNF207	chr1	6201119	6226299
RNF207_chr1_6201119_6226299	0/0	c0018	1905	1	1	0	0	0	0	copy fasta	RNF207	chr1	6201119	6226299
RNF207_chr1_6201119_6226299	0/0	c0019	1905	1	0	0	1	0	0	copy fasta	RNF207	chr1	6201119	6226299
RNF207_chr1_6201119_6226299	0/0	c0020	1905	1	0	0	1	0	0	copy fasta	RNF207	chr1	6201119	6226299
RNF207_chr1_6201119_6226299	0/0	c0021	1905	1	0	0	1	0	0	copy fasta	RNF207	chr1	6201119	6226299
RNF207_chr1_6201119_6226299	0/0	c0022	1905	1	1	0	0	0	0	copy fasta	RNF207	chr1	6201119	6226299
RNF207_chr1_6201119_6226299	0/0	c0023	1905	1	1	0	0	0	0	copy fasta	RNF207	chr1	6201119	6226299
RNF207_chr1_6201119_6226299	0/0	c0024	1905	1	1	0	0	0	0	copy fasta	RNF207	chr1	6201119	6226299
RNF207_chr1_6201119_6226299	0/0	c0025	1905	1	1	0	0	0	0	copy fasta	RNF207	chr1	6201119	6226299
RNF207_chr1_6201119_6226299	0/0	c0026	1905	1	0	0	0	0	1	copy fasta	RNF207	chr1	6201119	6226299
RNF207_chr1_6201119_6226299	0/0	c0027	1905	1	0	0	1	0	0	copy fasta	RNF207	chr1	6201119	6226299
RNF208_chr9_137215259_137227240	1/1	c0001	786	380	91	77	154	17	39	copy fasta	RNF208	chr9	137215259	137227240