JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RNF208_chr9_137215259_137227240	0/0	c0002	786	7	2	1	1	1	2	copy fasta	RNF208	chr9	137215259	137227240
RNF208_chr9_137215259_137227240	0/0	c0003	786	1	1	0	0	0	0	copy fasta	RNF208	chr9	137215259	137227240
RNF208_chr9_137215259_137227240	0/0	c0004	786	1	0	0	0	0	1	copy fasta	RNF208	chr9	137215259	137227240
RNF208_chr9_137215259_137227240	0/0	c0005	786	1	0	0	1	0	0	copy fasta	RNF208	chr9	137215259	137227240
RNF20_chr9_101528853_101568344	1/0	c0001	2928	224	64	50	84	9	16	copy fasta	RNF20	chr9	101528853	101568344
RNF20_chr9_101528853_101568344	0/0	c0002	2928	77	0	9	55	2	11	copy fasta	RNF20	chr9	101528853	101568344
RNF20_chr9_101528853_101568344	0/0	c0003	2928	57	14	11	22	5	5	copy fasta	RNF20	chr9	101528853	101568344
RNF20_chr9_101528853_101568344	0/1	c0004	2928	28	0	9	13	0	5	copy fasta	RNF20	chr9	101528853	101568344
RNF20_chr9_101528853_101568344	0/0	c0005	2928	4	4	0	0	0	0	copy fasta	RNF20	chr9	101528853	101568344
RNF20_chr9_101528853_101568344	0/0	c0006	2928	4	4	0	0	0	0	copy fasta	RNF20	chr9	101528853	101568344
RNF20_chr9_101528853_101568344	0/0	c0007	2928	3	0	0	0	0	3	copy fasta	RNF20	chr9	101528853	101568344
RNF20_chr9_101528853_101568344	0/0	c0008	2928	1	0	0	1	0	0	copy fasta	RNF20	chr9	101528853	101568344
RNF20_chr9_101528853_101568344	0/0	c0009	2928	1	0	0	1	0	0	copy fasta	RNF20	chr9	101528853	101568344
RNF20_chr9_101528853_101568344	0/0	c0010	2928	1	1	0	0	0	0	copy fasta	RNF20	chr9	101528853	101568344
RNF20_chr9_101528853_101568344	0/0	c0011	2928	1	1	0	0	0	0	copy fasta	RNF20	chr9	101528853	101568344
RNF20_chr9_101528853_101568344	0/0	c0012	2928	1	0	0	1	0	0	copy fasta	RNF20	chr9	101528853	101568344
RNF20_chr9_101528853_101568344	0/0	c0013	2928	1	0	0	1	0	0	copy fasta	RNF20	chr9	101528853	101568344
RNF20_chr9_101528853_101568344	0/0	c0014	2928	1	0	0	1	0	0	copy fasta	RNF20	chr9	101528853	101568344
RNF20_chr9_101528853_101568344	0/0	c0015	2928	1	0	1	0	0	0	copy fasta	RNF20	chr9	101528853	101568344
RNF20_chr9_101528853_101568344	0/0	c0016	2928	1	0	0	1	0	0	copy fasta	RNF20	chr9	101528853	101568344
RNF212B_chr14_23232936_23278477	1/1	c0001	903	365	95	61	171	18	18	copy fasta	RNF212B	chr14	23232936	23278477
RNF212B_chr14_23232936_23278477	0/0	c0002	903	1	0	0	1	0	0	copy fasta	RNF212B	chr14	23232936	23278477
RNF212B_chr14_23232936_23278477	0/0	c0003	903	1	0	1	0	0	0	copy fasta	RNF212B	chr14	23232936	23278477
RNF212B_chr14_23232936_23278477	0/0	c0004	903	1	1	0	0	0	0	copy fasta	RNF212B	chr14	23232936	23278477
RNF212_chr4_1066478_1118564	0/1	c0001	894	219	33	42	111	5	27	copy fasta	RNF212	chr4	1066478	1118564
RNF212_chr4_1066478_1118564	1/0	c0002	894	169	48	34	69	2	15	copy fasta	RNF212	chr4	1066478	1118564
RNF212_chr4_1066478_1118564	0/0	c0003	894	5	5	0	0	0	0	copy fasta	RNF212	chr4	1066478	1118564
RNF212_chr4_1066478_1118564	0/0	c0004	894	4	0	0	4	0	0	copy fasta	RNF212	chr4	1066478	1118564
RNF212_chr4_1066478_1118564	0/0	c0005	894	3	1	1	0	1	0	copy fasta	RNF212	chr4	1066478	1118564
RNF212_chr4_1066478_1118564	0/0	c0006	894	2	0	0	0	0	2	copy fasta	RNF212	chr4	1066478	1118564
RNF212_chr4_1066478_1118564	0/0	c0007	894	1	0	1	0	0	0	copy fasta	RNF212	chr4	1066478	1118564
RNF212_chr4_1066478_1118564	0/0	c0008	894	1	1	0	0	0	0	copy fasta	RNF212	chr4	1066478	1118564
RNF212_chr4_1066478_1118564	0/0	c0009	894	1	1	0	0	0	0	copy fasta	RNF212	chr4	1066478	1118564
RNF212_chr4_1066478_1118564	0/0	c0010	894	1	1	0	0	0	0	copy fasta	RNF212	chr4	1066478	1118564
RNF213_chr17_80255852_80403794	1/0	c0001	15624	31	1	7	20	1	1	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0002	15624	27	1	11	7	0	8	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0003	15624	13	0	0	13	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0004	15624	11	0	3	8	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0005	15624	6	0	1	5	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0006	15624	6	1	1	4	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0007	15624	5	0	1	2	0	2	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0008	15624	5	0	1	3	0	1	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0009	15624	5	0	0	5	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0010	15624	5	0	2	2	0	1	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0011	15624	4	0	2	0	0	2	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0012	15624	4	1	3	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0013	15624	3	3	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/1	c0014	15624	3	0	1	0	1	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0015	15624	3	0	3	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0016	15624	3	2	0	0	0	1	copy fasta	RNF213	chr17	80255852	80403794