JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RNF213_chr17_80255852_80403794	0/0	c0067	15624	1	0	0	0	0	1	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0068	15624	1	0	0	1	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0069	15624	1	0	0	1	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0070	15624	1	0	0	1	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0071	15624	1	0	1	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0072	15624	1	0	1	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0073	15624	1	0	0	0	0	1	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0074	15624	1	0	0	1	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0075	15624	1	0	1	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0076	15624	1	0	1	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0077	15624	1	0	0	1	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0078	15624	1	0	1	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0079	15624	1	0	0	1	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0080	15624	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0081	15624	1	0	0	1	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0082	15624	1	0	0	1	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0083	15624	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0084	15624	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0085	15624	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0086	15624	1	0	0	1	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0087	15624	1	0	0	1	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0088	15624	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0089	15624	1	0	1	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0090	15624	1	0	0	0	1	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0091	15624	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0092	15624	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0093	15624	1	0	1	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0094	15624	1	0	1	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0095	15624	1	0	1	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0096	15624	1	0	0	1	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0097	15624	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0098	15624	1	0	0	1	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0099	15624	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0100	15624	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0101	15624	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0102	15624	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0103	15624	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0104	15624	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0105	15624	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0106	15624	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0107	15624	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0108	15624	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0109	15624	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0110	15624	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0111	15624	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0112	15624	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0113	15624	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0114	15624	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0115	15624	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0116	15624	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794