JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RNF213_chr17_80255852_80403794	0/0	c0117	15624	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0118	15624	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0119	15624	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0120	15624	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0121	15624	1	0	0	1	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0122	15624	1	0	0	1	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0123	15624	1	0	1	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0124	15624	1	0	1	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0125	15624	1	0	0	1	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0126	15624	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0127	15624	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0128	15624	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0129	15624	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0130	15624	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0131	15624	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0132	15624	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0133	15624	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0134	15624	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0135	15624	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0136	15624	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0137	15624	1	0	1	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0138	15624	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0139	15624	1	0	0	0	0	1	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0140	15624	1	0	0	1	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0141	15624	1	0	0	1	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0142	15624	1	0	0	1	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0143	15624	1	0	0	1	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0144	15624	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0145	15624	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0146	15624	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	c0147	15624	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF214_chr11_117227671_117291454	1/1	c0001	2112	353	78	63	150	16	44	copy fasta	RNF214	chr11	117227671	117291454
RNF214_chr11_117227671_117291454	0/0	c0002	2112	4	4	0	0	0	0	copy fasta	RNF214	chr11	117227671	117291454
RNF214_chr11_117227671_117291454	0/0	c0003	2112	2	0	0	2	0	0	copy fasta	RNF214	chr11	117227671	117291454
RNF214_chr11_117227671_117291454	0/0	c0004	2083	1	0	1	0	0	0	copy fasta	RNF214	chr11	117227671	117291454
RNF215_chr22_30373821_30392411	0/0	c0001	1134	147	19	29	79	7	13	copy fasta	RNF215	chr22	30373821	30392411
RNF215_chr22_30373821_30392411	0/1	c0002	1134	119	14	18	66	2	18	copy fasta	RNF215	chr22	30373821	30392411
RNF215_chr22_30373821_30392411	1/0	c0003	1134	113	52	23	25	5	7	copy fasta	RNF215	chr22	30373821	30392411
RNF215_chr22_30373821_30392411	0/0	c0004	1134	34	1	7	17	3	6	copy fasta	RNF215	chr22	30373821	30392411
RNF215_chr22_30373821_30392411	0/0	c0005	1134	6	4	1	1	0	0	copy fasta	RNF215	chr22	30373821	30392411
RNF215_chr22_30373821_30392411	0/0	c0006	1134	3	3	0	0	0	0	copy fasta	RNF215	chr22	30373821	30392411
RNF215_chr22_30373821_30392411	0/0	c0007	1134	3	0	0	3	0	0	copy fasta	RNF215	chr22	30373821	30392411
RNF215_chr22_30373821_30392411	0/0	c0008	1149	1	0	0	1	0	0	copy fasta	RNF215	chr22	30373821	30392411
RNF215_chr22_30373821_30392411	0/0	c0009	1134	1	0	1	0	0	0	copy fasta	RNF215	chr22	30373821	30392411
RNF215_chr22_30373821_30392411	0/0	c0010	1134	1	0	1	0	0	0	copy fasta	RNF215	chr22	30373821	30392411
RNF215_chr22_30373821_30392411	0/0	c0011	1134	1	1	0	0	0	0	copy fasta	RNF215	chr22	30373821	30392411
RNF215_chr22_30373821_30392411	0/0	c0012	1134	1	0	0	1	0	0	copy fasta	RNF215	chr22	30373821	30392411
RNF215_chr22_30373821_30392411	0/0	c0013	1134	1	0	0	0	1	0	copy fasta	RNF215	chr22	30373821	30392411
RNF215_chr22_30373821_30392411	0/0	c0014	1134	1	0	0	1	0	0	copy fasta	RNF215	chr22	30373821	30392411
RNF216_chr7_5615047_5786663	1/1	c0001	2772	199	47	57	54	7	32	copy fasta	RNF216	chr7	5615047	5786663