JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RNF216_chr7_5615047_5786663	0/0	c0002	2772	40	22	5	10	0	3	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	c0003	2772	6	6	0	0	0	0	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	c0004	2772	4	4	0	0	0	0	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	c0005	2772	3	2	1	0	0	0	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	c0006	2772	3	0	0	0	1	2	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	c0007	2772	2	0	2	0	0	0	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	c0008	2772	2	2	0	0	0	0	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	c0009	2772	2	2	0	0	0	0	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	c0010	2772	2	2	0	0	0	0	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	c0011	2772	1	1	0	0	0	0	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	c0012	2772	1	0	0	1	0	0	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	c0013	2772	1	1	0	0	0	0	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	c0014	2772	1	0	0	1	0	0	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	c0015	2772	1	0	0	1	0	0	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	c0016	2772	1	0	0	1	0	0	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	c0017	2772	1	0	1	0	0	0	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	c0018	2772	1	0	1	0	0	0	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	c0019	2772	1	1	0	0	0	0	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	c0020	2772	1	0	1	0	0	0	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	c0021	2772	1	0	0	0	0	1	copy fasta	RNF216	chr7	5615047	5786663
RNF217_chr6_124957437_125097633	0/0	c0001	1629	198	52	41	75	5	25	copy fasta	RNF217	chr6	124957437	125097633
RNF217_chr6_124957437_125097633	1/1	c0002	1629	30	5	7	10	1	5	copy fasta	RNF217	chr6	124957437	125097633
RNF217_chr6_124957437_125097633	0/0	c0003	1629	14	12	2	0	0	0	copy fasta	RNF217	chr6	124957437	125097633
RNF217_chr6_124957437_125097633	0/0	c0004	1629	7	6	1	0	0	0	copy fasta	RNF217	chr6	124957437	125097633
RNF217_chr6_124957437_125097633	0/0	c0005	1629	3	0	3	0	0	0	copy fasta	RNF217	chr6	124957437	125097633
RNF217_chr6_124957437_125097633	0/0	c0006	1629	3	1	0	2	0	0	copy fasta	RNF217	chr6	124957437	125097633
RNF217_chr6_124957437_125097633	0/0	c0007	1629	2	2	0	0	0	0	copy fasta	RNF217	chr6	124957437	125097633
RNF217_chr6_124957437_125097633	0/0	c0008	1629	2	2	0	0	0	0	copy fasta	RNF217	chr6	124957437	125097633
RNF217_chr6_124957437_125097633	0/0	c0009	1629	2	2	0	0	0	0	copy fasta	RNF217	chr6	124957437	125097633
RNF217_chr6_124957437_125097633	0/0	c0010	1629	2	2	0	0	0	0	copy fasta	RNF217	chr6	124957437	125097633
RNF217_chr6_124957437_125097633	0/0	c0011	1629	1	1	0	0	0	0	copy fasta	RNF217	chr6	124957437	125097633
RNF217_chr6_124957437_125097633	0/0	c0012	1629	1	1	0	0	0	0	copy fasta	RNF217	chr6	124957437	125097633
RNF217_chr6_124957437_125097633	0/0	c0013	1629	1	1	0	0	0	0	copy fasta	RNF217	chr6	124957437	125097633
RNF217_chr6_124957437_125097633	0/0	c0014	1629	1	0	0	1	0	0	copy fasta	RNF217	chr6	124957437	125097633
RNF217_chr6_124957437_125097633	0/0	c0015	1629	1	1	0	0	0	0	copy fasta	RNF217	chr6	124957437	125097633
RNF220_chr1_44400255_44656723	0/0	c0001	1701	207	72	39	61	12	23	copy fasta	RNF220	chr1	44400255	44656723
RNF220_chr1_44400255_44656723	0/0	c0002	1701	7	6	1	0	0	0	copy fasta	RNF220	chr1	44400255	44656723
RNF220_chr1_44400255_44656723	0/0	c0003	1701	2	0	0	1	0	1	copy fasta	RNF220	chr1	44400255	44656723
RNF220_chr1_44400255_44656723	0/0	c0004	1701	1	1	0	0	0	0	copy fasta	RNF220	chr1	44400255	44656723
RNF220_chr1_44400255_44656723	0/0	c0005	1701	1	1	0	0	0	0	copy fasta	RNF220	chr1	44400255	44656723
RNF222_chr17_8385702_8402827	1/0	c0001	663	182	20	23	117	5	16	copy fasta	RNF222	chr17	8385702	8402827
RNF222_chr17_8385702_8402827	0/0	c0002	663	173	68	37	42	8	18	copy fasta	RNF222	chr17	8385702	8402827
RNF222_chr17_8385702_8402827	0/1	c0003	663	70	2	16	37	5	9	copy fasta	RNF222	chr17	8385702	8402827
RNF222_chr17_8385702_8402827	0/0	c0004	663	9	9	0	0	0	0	copy fasta	RNF222	chr17	8385702	8402827
RNF222_chr17_8385702_8402827	0/0	c0005	663	1	1	0	0	0	0	copy fasta	RNF222	chr17	8385702	8402827
RNF222_chr17_8385702_8402827	0/0	c0006	663	1	0	0	0	0	1	copy fasta	RNF222	chr17	8385702	8402827
RNF223_chr1_1065967_1079306	0/1	c0001	750	159	21	36	82	5	14	copy fasta	RNF223	chr1	1065967	1079306
RNF223_chr1_1065967_1079306	0/0	c0002	750	68	50	5	8	2	3	copy fasta	RNF223	chr1	1065967	1079306
RNF223_chr1_1065967_1079306	1/0	c0003	750	44	12	11	7	5	8	copy fasta	RNF223	chr1	1065967	1079306
RNF223_chr1_1065967_1079306	0/0	c0004	750	39	5	7	13	4	10	copy fasta	RNF223	chr1	1065967	1079306