JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RNF223_chr1_1065967_1079306	0/0	c0005	750	2	2	0	0	0	0	copy fasta	RNF223	chr1	1065967	1079306
RNF223_chr1_1065967_1079306	0/0	c0006	750	2	0	2	0	0	0	copy fasta	RNF223	chr1	1065967	1079306
RNF223_chr1_1065967_1079306	0/0	c0007	750	2	2	0	0	0	0	copy fasta	RNF223	chr1	1065967	1079306
RNF223_chr1_1065967_1079306	0/0	c0008	750	1	0	0	0	0	1	copy fasta	RNF223	chr1	1065967	1079306
RNF223_chr1_1065967_1079306	0/0	c0009	750	1	1	0	0	0	0	copy fasta	RNF223	chr1	1065967	1079306
RNF223_chr1_1065967_1079306	0/0	c0010	750	1	0	0	0	1	0	copy fasta	RNF223	chr1	1065967	1079306
RNF223_chr1_1065967_1079306	0/0	c0011	750	1	0	0	0	1	0	copy fasta	RNF223	chr1	1065967	1079306
RNF223_chr1_1065967_1079306	0/0	c0012	750	1	0	1	0	0	0	copy fasta	RNF223	chr1	1065967	1079306
RNF223_chr1_1065967_1079306	0/0	c0013	750	1	1	0	0	0	0	copy fasta	RNF223	chr1	1065967	1079306
RNF223_chr1_1065967_1079306	0/0	c0014	750	1	1	0	0	0	0	copy fasta	RNF223	chr1	1065967	1079306
RNF223_chr1_1065967_1079306	0/0	c0015	750	1	1	0	0	0	0	copy fasta	RNF223	chr1	1065967	1079306
RNF224_chr9_137222502_137234640	0/0	c0001	471	183	36	35	85	9	18	copy fasta	RNF224	chr9	137222502	137234640
RNF224_chr9_137222502_137234640	1/1	c0002	471	170	48	46	45	9	20	copy fasta	RNF224	chr9	137222502	137234640
RNF224_chr9_137222502_137234640	0/0	c0003	469	12	12	0	0	0	0	copy fasta	RNF224	chr9	137222502	137234640
RNF224_chr9_137222502_137234640	0/0	c0004	471	12	0	0	12	0	0	copy fasta	RNF224	chr9	137222502	137234640
RNF224_chr9_137222502_137234640	0/0	c0005	471	11	0	0	10	0	1	copy fasta	RNF224	chr9	137222502	137234640
RNF224_chr9_137222502_137234640	0/0	c0006	471	1	1	0	0	0	0	copy fasta	RNF224	chr9	137222502	137234640
RNF224_chr9_137222502_137234640	0/0	c0007	471	1	0	1	0	0	0	copy fasta	RNF224	chr9	137222502	137234640
RNF224_chr9_137222502_137234640	0/0	c0008	471	1	0	0	0	0	1	copy fasta	RNF224	chr9	137222502	137234640
RNF224_chr9_137222502_137234640	0/0	c0009	471	1	1	0	0	0	0	copy fasta	RNF224	chr9	137222502	137234640
RNF224_chr9_137222502_137234640	0/0	c0010	471	1	0	0	1	0	0	copy fasta	RNF224	chr9	137222502	137234640
RNF224_chr9_137222502_137234640	0/0	c0011	471	1	0	0	1	0	0	copy fasta	RNF224	chr9	137222502	137234640
RNF225_chr19_58390656_58402079	0/1	c0001	990	288	21	61	157	13	35	copy fasta	RNF225	chr19	58390656	58402079
RNF225_chr19_58390656_58402079	1/0	c0002	990	54	18	13	15	0	7	copy fasta	RNF225	chr19	58390656	58402079
RNF225_chr19_58390656_58402079	0/0	c0003	990	24	23	1	0	0	0	copy fasta	RNF225	chr19	58390656	58402079
RNF225_chr19_58390656_58402079	0/0	c0004	990	18	16	2	0	0	0	copy fasta	RNF225	chr19	58390656	58402079
RNF225_chr19_58390656_58402079	0/0	c0005	990	9	9	0	0	0	0	copy fasta	RNF225	chr19	58390656	58402079
RNF225_chr19_58390656_58402079	0/0	c0006	990	8	0	4	0	3	1	copy fasta	RNF225	chr19	58390656	58402079
RNF225_chr19_58390656_58402079	0/0	c0007	990	5	4	1	0	0	0	copy fasta	RNF225	chr19	58390656	58402079
RNF225_chr19_58390656_58402079	0/0	c0008	990	4	3	1	0	0	0	copy fasta	RNF225	chr19	58390656	58402079
RNF225_chr19_58390656_58402079	0/0	c0009	990	4	0	0	4	0	0	copy fasta	RNF225	chr19	58390656	58402079
RNF225_chr19_58390656_58402079	0/0	c0010	990	1	0	0	1	0	0	copy fasta	RNF225	chr19	58390656	58402079
RNF225_chr19_58390656_58402079	0/0	c0011	990	1	0	0	1	0	0	copy fasta	RNF225	chr19	58390656	58402079
RNF225_chr19_58390656_58402079	0/0	c0012	990	1	1	0	0	0	0	copy fasta	RNF225	chr19	58390656	58402079
RNF225_chr19_58390656_58402079	0/0	c0013	990	1	0	0	0	0	1	copy fasta	RNF225	chr19	58390656	58402079
RNF225_chr19_58390656_58402079	0/0	c0014	990	1	0	1	0	0	0	copy fasta	RNF225	chr19	58390656	58402079
RNF225_chr19_58390656_58402079	0/0	c0015	990	1	0	0	1	0	0	copy fasta	RNF225	chr19	58390656	58402079
RNF225_chr19_58390656_58402079	0/0	c0016	990	1	1	0	0	0	0	copy fasta	RNF225	chr19	58390656	58402079
RNF225_chr19_58390656_58402079	0/0	c0017	990	1	0	0	1	0	0	copy fasta	RNF225	chr19	58390656	58402079
RNF227_chr17_7908339_7921289	1/1	c0001	573	350	78	76	139	17	38	copy fasta	RNF227	chr17	7908339	7921289
RNF227_chr17_7908339_7921289	0/0	c0002	573	39	0	1	36	0	2	copy fasta	RNF227	chr17	7908339	7921289
RNF227_chr17_7908339_7921289	0/0	c0003	573	7	7	0	0	0	0	copy fasta	RNF227	chr17	7908339	7921289
RNF227_chr17_7908339_7921289	0/0	c0004	573	4	4	0	0	0	0	copy fasta	RNF227	chr17	7908339	7921289
RNF227_chr17_7908339_7921289	0/0	c0005	573	2	0	1	0	1	0	copy fasta	RNF227	chr17	7908339	7921289
RNF227_chr17_7908339_7921289	0/0	c0006	573	2	0	0	0	0	2	copy fasta	RNF227	chr17	7908339	7921289
RNF227_chr17_7908339_7921289	0/0	c0007	573	1	0	0	1	0	0	copy fasta	RNF227	chr17	7908339	7921289
RNF227_chr17_7908339_7921289	0/0	c0008	573	1	1	0	0	0	0	copy fasta	RNF227	chr17	7908339	7921289
RNF24_chr20_3922311_4020558	1/1	c0001	447	362	88	66	158	10	38	copy fasta	RNF24	chr20	3922311	4020558
RNF25_chr2_218658892_218677002	1/1	c0001	1380	237	58	44	86	11	36	copy fasta	RNF25	chr2	218658892	218677002
RNF25_chr2_218658892_218677002	0/0	c0002	1380	49	8	1	37	0	3	copy fasta	RNF25	chr2	218658892	218677002