JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RNF25_chr2_218658892_218677002	0/0	c0003	1380	10	10	0	0	0	0	copy fasta	RNF25	chr2	218658892	218677002
RNF25_chr2_218658892_218677002	0/0	c0004	1380	6	5	1	0	0	0	copy fasta	RNF25	chr2	218658892	218677002
RNF25_chr2_218658892_218677002	0/0	c0005	1380	5	5	0	0	0	0	copy fasta	RNF25	chr2	218658892	218677002
RNF25_chr2_218658892_218677002	0/0	c0006	1380	4	4	0	0	0	0	copy fasta	RNF25	chr2	218658892	218677002
RNF25_chr2_218658892_218677002	0/0	c0007	1380	2	2	0	0	0	0	copy fasta	RNF25	chr2	218658892	218677002
RNF25_chr2_218658892_218677002	0/0	c0008	1380	2	0	0	2	0	0	copy fasta	RNF25	chr2	218658892	218677002
RNF25_chr2_218658892_218677002	0/0	c0009	1380	1	0	0	0	1	0	copy fasta	RNF25	chr2	218658892	218677002
RNF25_chr2_218658892_218677002	0/0	c0010	1380	1	0	0	1	0	0	copy fasta	RNF25	chr2	218658892	218677002
RNF25_chr2_218658892_218677002	0/0	c0011	1380	1	1	0	0	0	0	copy fasta	RNF25	chr2	218658892	218677002
RNF25_chr2_218658892_218677002	0/0	c0012	1380	1	0	0	0	0	1	copy fasta	RNF25	chr2	218658892	218677002
RNF25_chr2_218658892_218677002	0/0	c0013	1380	1	1	0	0	0	0	copy fasta	RNF25	chr2	218658892	218677002
RNF26_chr11_119329527_119342309	0/0	c0001	1302	280	67	50	121	12	30	copy fasta	RNF26	chr11	119329527	119342309
RNF26_chr11_119329527_119342309	1/1	c0002	1302	119	18	23	63	4	9	copy fasta	RNF26	chr11	119329527	119342309
RNF26_chr11_119329527_119342309	0/0	c0003	1302	9	0	0	9	0	0	copy fasta	RNF26	chr11	119329527	119342309
RNF26_chr11_119329527_119342309	0/0	c0004	1302	2	0	0	2	0	0	copy fasta	RNF26	chr11	119329527	119342309
RNF26_chr11_119329527_119342309	0/0	c0005	1302	2	1	1	0	0	0	copy fasta	RNF26	chr11	119329527	119342309
RNF26_chr11_119329527_119342309	0/0	c0006	1302	2	2	0	0	0	0	copy fasta	RNF26	chr11	119329527	119342309
RNF26_chr11_119329527_119342309	0/0	c0007	1302	1	0	0	1	0	0	copy fasta	RNF26	chr11	119329527	119342309
RNF26_chr11_119329527_119342309	0/0	c0008	1302	1	0	0	1	0	0	copy fasta	RNF26	chr11	119329527	119342309
RNF26_chr11_119329527_119342309	0/0	c0009	1302	1	0	0	1	0	0	copy fasta	RNF26	chr11	119329527	119342309
RNF26_chr11_119329527_119342309	0/0	c0010	1302	1	1	0	0	0	0	copy fasta	RNF26	chr11	119329527	119342309
RNF26_chr11_119329527_119342309	0/0	c0011	1302	1	0	0	1	0	0	copy fasta	RNF26	chr11	119329527	119342309
RNF26_chr11_119329527_119342309	0/0	c0012	1302	1	0	0	0	0	1	copy fasta	RNF26	chr11	119329527	119342309
RNF26_chr11_119329527_119342309	0/0	c0013	1302	1	1	0	0	0	0	copy fasta	RNF26	chr11	119329527	119342309
RNF26_chr11_119329527_119342309	0/0	c0014	1302	1	0	0	1	0	0	copy fasta	RNF26	chr11	119329527	119342309
RNF2_chr1_185040558_185107603	1/1	c0001	1011	348	89	74	148	7	28	copy fasta	RNF2	chr1	185040558	185107603
RNF2_chr1_185040558_185107603	0/0	c0002	1011	1	0	0	0	1	0	copy fasta	RNF2	chr1	185040558	185107603
RNF2_chr1_185040558_185107603	0/0	c0003	1011	1	1	0	0	0	0	copy fasta	RNF2	chr1	185040558	185107603
RNF31_chr14_24142498_24165655	1/1	c0001	3219	237	51	56	79	12	37	copy fasta	RNF31	chr14	24142498	24165655
RNF31_chr14_24142498_24165655	0/0	c0002	3219	139	32	16	75	6	10	copy fasta	RNF31	chr14	24142498	24165655
RNF31_chr14_24142498_24165655	0/0	c0003	3219	34	0	0	34	0	0	copy fasta	RNF31	chr14	24142498	24165655
RNF31_chr14_24142498_24165655	0/0	c0004	3219	9	0	0	9	0	0	copy fasta	RNF31	chr14	24142498	24165655
RNF31_chr14_24142498_24165655	0/0	c0005	3219	5	4	1	0	0	0	copy fasta	RNF31	chr14	24142498	24165655
RNF31_chr14_24142498_24165655	0/0	c0006	3219	2	0	0	0	0	2	copy fasta	RNF31	chr14	24142498	24165655
RNF31_chr14_24142498_24165655	0/0	c0007	3219	2	0	0	2	0	0	copy fasta	RNF31	chr14	24142498	24165655
RNF31_chr14_24142498_24165655	0/0	c0008	3219	2	2	0	0	0	0	copy fasta	RNF31	chr14	24142498	24165655
RNF31_chr14_24142498_24165655	0/0	c0009	3219	2	2	0	0	0	0	copy fasta	RNF31	chr14	24142498	24165655
RNF31_chr14_24142498_24165655	0/0	c0010	3219	1	0	0	0	0	1	copy fasta	RNF31	chr14	24142498	24165655
RNF31_chr14_24142498_24165655	0/0	c0011	3219	1	0	1	0	0	0	copy fasta	RNF31	chr14	24142498	24165655
RNF31_chr14_24142498_24165655	0/0	c0012	3219	1	0	0	1	0	0	copy fasta	RNF31	chr14	24142498	24165655
RNF31_chr14_24142498_24165655	0/0	c0013	3219	1	1	0	0	0	0	copy fasta	RNF31	chr14	24142498	24165655
RNF31_chr14_24142498_24165655	0/0	c0014	3219	1	1	0	0	0	0	copy fasta	RNF31	chr14	24142498	24165655
RNF31_chr14_24142498_24165655	0/0	c0015	3219	1	1	0	0	0	0	copy fasta	RNF31	chr14	24142498	24165655
RNF31_chr14_24142498_24165655	0/0	c0016	3219	1	1	0	0	0	0	copy fasta	RNF31	chr14	24142498	24165655
RNF31_chr14_24142498_24165655	0/0	c0017	3219	1	0	0	1	0	0	copy fasta	RNF31	chr14	24142498	24165655
RNF31_chr14_24142498_24165655	0/0	c0018	3219	1	0	0	1	0	0	copy fasta	RNF31	chr14	24142498	24165655
RNF31_chr14_24142498_24165655	0/0	c0019	3219	1	0	0	1	0	0	copy fasta	RNF31	chr14	24142498	24165655
RNF31_chr14_24142498_24165655	0/0	c0020	3219	1	1	0	0	0	0	copy fasta	RNF31	chr14	24142498	24165655
RNF31_chr14_24142498_24165655	0/0	c0021	3219	1	0	0	1	0	0	copy fasta	RNF31	chr14	24142498	24165655
RNF32_chr7_156635774_156682130	1/1	c0001	1089	185	12	41	89	8	33	copy fasta	RNF32	chr7	156635774	156682130