JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RNF32_chr7_156635774_156682130	0/0	c0002	1089	178	43	26	93	7	9	copy fasta	RNF32	chr7	156635774	156682130
RNF32_chr7_156635774_156682130	0/0	c0003	1089	50	14	2	30	1	3	copy fasta	RNF32	chr7	156635774	156682130
RNF32_chr7_156635774_156682130	0/0	c0004	1089	15	14	0	1	0	0	copy fasta	RNF32	chr7	156635774	156682130
RNF32_chr7_156635774_156682130	0/0	c0005	1089	7	7	0	0	0	0	copy fasta	RNF32	chr7	156635774	156682130
RNF32_chr7_156635774_156682130	0/0	c0006	1089	3	3	0	0	0	0	copy fasta	RNF32	chr7	156635774	156682130
RNF32_chr7_156635774_156682130	0/0	c0007	1089	2	0	0	2	0	0	copy fasta	RNF32	chr7	156635774	156682130
RNF32_chr7_156635774_156682130	0/0	c0008	1089	2	0	0	0	0	2	copy fasta	RNF32	chr7	156635774	156682130
RNF32_chr7_156635774_156682130	0/0	c0009	1089	2	0	0	2	0	0	copy fasta	RNF32	chr7	156635774	156682130
RNF32_chr7_156635774_156682130	0/0	c0010	1089	1	0	0	1	0	0	copy fasta	RNF32	chr7	156635774	156682130
RNF32_chr7_156635774_156682130	0/0	c0011	1089	1	0	0	0	0	1	copy fasta	RNF32	chr7	156635774	156682130
RNF32_chr7_156635774_156682130	0/0	c0012	1089	1	1	0	0	0	0	copy fasta	RNF32	chr7	156635774	156682130
RNF32_chr7_156635774_156682130	0/0	c0013	1089	1	0	1	0	0	0	copy fasta	RNF32	chr7	156635774	156682130
RNF34_chr12_121395118_121429348	1/1	c0001	1119	326	68	51	153	12	40	copy fasta	RNF34	chr12	121395118	121429348
RNF34_chr12_121395118_121429348	0/0	c0002	1116	14	14	0	0	0	0	copy fasta	RNF34	chr12	121395118	121429348
RNF34_chr12_121395118_121429348	0/0	c0003	1119	9	0	9	0	0	0	copy fasta	RNF34	chr12	121395118	121429348
RNF34_chr12_121395118_121429348	0/0	c0004	1157	1	0	0	1	0	0	copy fasta	RNF34	chr12	121395118	121429348
RNF38_chr9_36331400_36405269	1/1	c0001	1548	400	88	76	178	14	42	copy fasta	RNF38	chr9	36331400	36405269
RNF38_chr9_36331400_36405269	0/0	c0002	1548	1	1	0	0	0	0	copy fasta	RNF38	chr9	36331400	36405269
RNF38_chr9_36331400_36405269	0/0	c0003	1548	1	1	0	0	0	0	copy fasta	RNF38	chr9	36331400	36405269
RNF39_chr6_30065270_30080769	0/1	c0001	1059	274	48	57	133	9	26	copy fasta	RNF39	chr6	30065270	30080769
RNF39_chr6_30065270_30080769	0/0	c0002	1059	62	31	3	23	0	5	copy fasta	RNF39	chr6	30065270	30080769
RNF39_chr6_30065270_30080769	0/0	c0003	1059	33	2	8	20	1	2	copy fasta	RNF39	chr6	30065270	30080769
RNF39_chr6_30065270_30080769	0/0	c0004	1059	29	3	2	18	5	1	copy fasta	RNF39	chr6	30065270	30080769
RNF39_chr6_30065270_30080769	0/0	c0005	1059	21	0	8	0	3	10	copy fasta	RNF39	chr6	30065270	30080769
RNF39_chr6_30065270_30080769	0/0	c0006	1059	17	0	0	17	0	0	copy fasta	RNF39	chr6	30065270	30080769
RNF39_chr6_30065270_30080769	0/0	c0007	1059	4	1	1	0	0	2	copy fasta	RNF39	chr6	30065270	30080769
RNF39_chr6_30065270_30080769	0/0	c0008	1059	2	0	0	2	0	0	copy fasta	RNF39	chr6	30065270	30080769
RNF39_chr6_30065270_30080769	0/0	c0009	1059	2	2	0	0	0	0	copy fasta	RNF39	chr6	30065270	30080769
RNF39_chr6_30065270_30080769	0/0	c0010	1059	2	2	0	0	0	0	copy fasta	RNF39	chr6	30065270	30080769
RNF39_chr6_30065270_30080769	0/0	c0011	1059	2	2	0	0	0	0	copy fasta	RNF39	chr6	30065270	30080769
RNF39_chr6_30065270_30080769	0/0	c0012	1059	1	1	0	0	0	0	copy fasta	RNF39	chr6	30065270	30080769
RNF39_chr6_30065270_30080769	0/0	c0013	1059	1	0	0	1	0	0	copy fasta	RNF39	chr6	30065270	30080769
RNF39_chr6_30065270_30080769	0/0	c0014	1059	1	0	1	0	0	0	copy fasta	RNF39	chr6	30065270	30080769
RNF40_chr16_30757322_30781307	0/1	c0001	3006	214	61	55	61	12	24	copy fasta	RNF40	chr16	30757322	30781307
RNF40_chr16_30757322_30781307	1/0	c0002	3006	6	4	1	0	0	0	copy fasta	RNF40	chr16	30757322	30781307
RNF40_chr16_30757322_30781307	0/0	c0003	3006	2	2	0	0	0	0	copy fasta	RNF40	chr16	30757322	30781307
RNF40_chr16_30757322_30781307	0/0	c0004	3006	2	1	1	0	0	0	copy fasta	RNF40	chr16	30757322	30781307
RNF40_chr16_30757322_30781307	0/0	c0005	3006	1	0	0	1	0	0	copy fasta	RNF40	chr16	30757322	30781307
RNF40_chr16_30757322_30781307	0/0	c0006	3006	1	1	0	0	0	0	copy fasta	RNF40	chr16	30757322	30781307
RNF40_chr16_30757322_30781307	0/0	c0007	3006	1	0	0	1	0	0	copy fasta	RNF40	chr16	30757322	30781307
RNF40_chr16_30757322_30781307	0/0	c0008	3006	1	0	0	1	0	0	copy fasta	RNF40	chr16	30757322	30781307
RNF40_chr16_30757322_30781307	0/0	c0009	3006	1	0	1	0	0	0	copy fasta	RNF40	chr16	30757322	30781307
RNF40_chr16_30757322_30781307	0/0	c0010	3006	1	1	0	0	0	0	copy fasta	RNF40	chr16	30757322	30781307
RNF41_chr12_56197179_56226922	1/1	c0001	954	330	84	57	153	12	22	copy fasta	RNF41	chr12	56197179	56226922
RNF41_chr12_56197179_56226922	0/0	c0002	954	2	2	0	0	0	0	copy fasta	RNF41	chr12	56197179	56226922
RNF41_chr12_56197179_56226922	0/0	c0003	954	2	2	0	0	0	0	copy fasta	RNF41	chr12	56197179	56226922
RNF41_chr12_56197179_56226922	0/0	c0004	954	1	0	1	0	0	0	copy fasta	RNF41	chr12	56197179	56226922
RNF41_chr12_56197179_56226922	0/0	c0005	954	1	0	0	1	0	0	copy fasta	RNF41	chr12	56197179	56226922
RNF43_chr17_58348676_58422534	1/0	c0001	2352	72	27	8	30	2	4	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	c0002	2352	64	8	12	32	2	10	copy fasta	RNF43	chr17	58348676	58422534