JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ATAD3A_chr1_1507162_1539685	0/0	c0004	1761	23	9	4	8	0	2	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	c0005	1761	7	0	2	4	1	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	c0006	1761	4	0	0	4	0	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	c0007	1761	3	3	0	0	0	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	c0008	1761	3	0	0	3	0	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	c0009	1761	3	3	0	0	0	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	c0010	1761	2	2	0	0	0	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	c0011	1761	2	0	0	2	0	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	c0012	1761	2	0	2	0	0	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	c0013	1761	2	2	0	0	0	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	c0014	1761	2	0	0	0	2	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	c0015	1761	2	0	0	2	0	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	c0016	1761	2	0	0	2	0	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	c0017	1761	2	2	0	0	0	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	c0018	1761	2	0	0	2	0	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	c0019	1761	1	0	0	1	0	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	c0020	1761	1	1	0	0	0	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	c0021	1761	1	0	1	0	0	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	c0022	1761	1	1	0	0	0	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	c0023	1761	1	1	0	0	0	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	c0024	1761	1	1	0	0	0	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	c0025	1761	1	1	0	0	0	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	c0026	1761	1	1	0	0	0	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	c0027	1761	1	0	0	1	0	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	c0028	1761	1	0	0	1	0	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	c0029	1761	1	0	1	0	0	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	c0030	1761	1	1	0	0	0	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	c0031	1761	1	0	1	0	0	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	c0032	1761	1	0	0	1	0	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	c0033	1761	1	1	0	0	0	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	c0034	1761	1	0	1	0	0	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	c0035	1761	1	0	0	0	0	1	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	c0036	1761	1	0	1	0	0	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	c0037	1761	1	1	0	0	0	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	c0038	1761	1	1	0	0	0	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	c0039	1761	1	0	0	0	0	1	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3B_chr1_1466765_1502848	0/0	c0001	1947	71	8	13	40	3	7	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	c0002	1947	48	18	2	20	0	8	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	1/1	c0003	1947	47	2	25	0	7	11	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	c0004	1947	25	0	5	20	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	c0005	1947	15	15	0	0	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	c0006	1947	10	10	0	0	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	c0007	1947	7	0	0	7	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	c0008	1947	5	4	1	0	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	c0009	1947	5	0	0	0	0	5	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	c0010	1947	3	0	0	3	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	c0011	1947	2	1	1	0	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	c0012	1947	2	2	0	0	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	c0013	1947	2	0	0	2	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	c0014	1947	2	2	0	0	0	0	copy fasta	ATAD3B	chr1	1466765	1502848