JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RNF43_chr17_58348676_58422534	0/0	c0003	2352	52	10	2	22	3	15	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	c0004	2352	26	14	6	4	1	1	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	c0005	2352	24	1	4	19	0	0	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	c0006	2352	18	2	12	0	3	1	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	c0007	2352	15	0	0	15	0	0	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	c0008	2352	14	2	7	5	0	0	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	c0009	2352	13	7	3	0	1	2	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	c0010	2352	12	1	10	0	0	1	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	c0011	2352	5	2	1	2	0	0	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	c0012	2352	5	0	1	2	0	2	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	c0013	2352	4	0	1	0	2	1	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	c0014	2352	4	0	0	4	0	0	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	c0015	2352	3	3	0	0	0	0	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/1	c0016	2352	2	0	1	0	0	0	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	c0017	2352	2	2	0	0	0	0	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	c0018	2352	2	0	0	0	0	2	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	c0019	2352	1	0	0	1	0	0	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	c0020	2352	1	1	0	0	0	0	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	c0021	2352	1	1	0	0	0	0	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	c0022	2352	1	1	0	0	0	0	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	c0023	2352	1	0	1	0	0	0	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	c0024	2352	1	0	1	0	0	0	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	c0025	2352	1	0	0	1	0	0	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	c0026	2352	1	0	0	1	0	0	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	c0027	2352	1	0	0	1	0	0	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	c0028	2352	1	0	0	1	0	0	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	c0029	2352	1	0	0	0	0	1	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	c0030	2352	1	0	1	0	0	0	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	c0031	2352	1	0	0	1	0	0	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	c0032	2352	1	0	1	0	0	0	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	c0033	2352	1	0	0	1	0	0	copy fasta	RNF43	chr17	58348676	58422534
RNF44_chr5_176521712_176542402	1/1	c0001	1299	419	89	79	191	16	42	copy fasta	RNF44	chr5	176521712	176542402
RNF44_chr5_176521712_176542402	0/0	c0002	1299	5	0	0	4	0	1	copy fasta	RNF44	chr5	176521712	176542402
RNF44_chr5_176521712_176542402	0/0	c0003	1299	3	3	0	0	0	0	copy fasta	RNF44	chr5	176521712	176542402
RNF44_chr5_176521712_176542402	0/0	c0004	1299	2	2	0	0	0	0	copy fasta	RNF44	chr5	176521712	176542402
RNF44_chr5_176521712_176542402	0/0	c0005	1299	2	2	0	0	0	0	copy fasta	RNF44	chr5	176521712	176542402
RNF44_chr5_176521712_176542402	0/0	c0006	1299	2	0	0	2	0	0	copy fasta	RNF44	chr5	176521712	176542402
RNF44_chr5_176521712_176542402	0/0	c0007	1299	1	0	0	1	0	0	copy fasta	RNF44	chr5	176521712	176542402
RNF44_chr5_176521712_176542402	0/0	c0008	1299	1	0	1	0	0	0	copy fasta	RNF44	chr5	176521712	176542402
RNF44_chr5_176521712_176542402	0/0	c0009	1299	1	0	0	1	0	0	copy fasta	RNF44	chr5	176521712	176542402
RNF44_chr5_176521712_176542402	0/0	c0010	1299	1	1	0	0	0	0	copy fasta	RNF44	chr5	176521712	176542402
RNF44_chr5_176521712_176542402	0/0	c0011	1299	1	0	0	1	0	0	copy fasta	RNF44	chr5	176521712	176542402
RNF44_chr5_176521712_176542402	0/0	c0012	1299	1	0	0	0	0	1	copy fasta	RNF44	chr5	176521712	176542402
RNF44_chr5_176521712_176542402	0/0	c0013	1320	1	0	0	1	0	0	copy fasta	RNF44	chr5	176521712	176542402
RNF44_chr5_176521712_176542402	0/0	c0014	1299	1	1	0	0	0	0	copy fasta	RNF44	chr5	176521712	176542402
RNF44_chr5_176521712_176542402	0/0	c0015	1299	1	0	0	1	0	0	copy fasta	RNF44	chr5	176521712	176542402
RNF44_chr5_176521712_176542402	0/0	c0016	1299	1	1	0	0	0	0	copy fasta	RNF44	chr5	176521712	176542402
RNF44_chr5_176521712_176542402	0/0	c0017	1299	1	1	0	0	0	0	copy fasta	RNF44	chr5	176521712	176542402
RNF4_chr4_2464106_2520857	1/1	c0001	573	366	87	60	156	18	43	copy fasta	RNF4	chr4	2464106	2520857
RNF4_chr4_2464106_2520857	0/0	c0002	573	6	4	2	0	0	0	copy fasta	RNF4	chr4	2464106	2520857