JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RNF4_chr4_2464106_2520857	0/0	c0003	573	3	1	2	0	0	0	copy fasta	RNF4	chr4	2464106	2520857
RNF4_chr4_2464106_2520857	0/0	c0004	573	2	2	0	0	0	0	copy fasta	RNF4	chr4	2464106	2520857
RNF4_chr4_2464106_2520857	0/0	c0005	573	1	0	0	0	0	1	copy fasta	RNF4	chr4	2464106	2520857
RNF5_chr6_32173405_32185793	0/1	c0001	543	359	57	73	182	12	34	copy fasta	RNF5	chr6	32173405	32185793
RNF5_chr6_32173405_32185793	0/0	c0002	543	47	15	3	15	4	10	copy fasta	RNF5	chr6	32173405	32185793
RNF5_chr6_32173405_32185793	0/0	c0003	543	30	21	2	5	0	2	copy fasta	RNF5	chr6	32173405	32185793
RNF5_chr6_32173405_32185793	0/0	c0004	543	5	1	1	3	0	0	copy fasta	RNF5	chr6	32173405	32185793
RNF5_chr6_32173405_32185793	0/0	c0005	543	4	3	1	0	0	0	copy fasta	RNF5	chr6	32173405	32185793
RNF5_chr6_32173405_32185793	0/0	c0006	543	1	0	0	1	0	0	copy fasta	RNF5	chr6	32173405	32185793
RNF5_chr6_32173405_32185793	0/0	c0007	543	1	1	0	0	0	0	copy fasta	RNF5	chr6	32173405	32185793
RNF6_chr13_26207775_26227314	1/1	c0001	2058	287	37	58	146	13	31	copy fasta	RNF6	chr13	26207775	26227314
RNF6_chr13_26207775_26227314	0/0	c0002	2058	63	23	3	25	2	10	copy fasta	RNF6	chr13	26207775	26227314
RNF6_chr13_26207775_26227314	0/0	c0003	2058	27	23	4	0	0	0	copy fasta	RNF6	chr13	26207775	26227314
RNF6_chr13_26207775_26227314	0/0	c0004	2058	19	2	5	10	0	2	copy fasta	RNF6	chr13	26207775	26227314
RNF6_chr13_26207775_26227314	0/0	c0005	2058	4	2	1	0	1	0	copy fasta	RNF6	chr13	26207775	26227314
RNF6_chr13_26207775_26227314	0/0	c0006	2058	1	1	0	0	0	0	copy fasta	RNF6	chr13	26207775	26227314
RNF6_chr13_26207775_26227314	0/0	c0007	2058	1	0	1	0	0	0	copy fasta	RNF6	chr13	26207775	26227314
RNF6_chr13_26207775_26227314	0/0	c0008	2058	1	0	0	1	0	0	copy fasta	RNF6	chr13	26207775	26227314
RNF6_chr13_26207775_26227314	0/0	c0009	2058	1	0	0	1	0	0	copy fasta	RNF6	chr13	26207775	26227314
RNF6_chr13_26207775_26227314	0/0	c0010	2058	1	0	0	1	0	0	copy fasta	RNF6	chr13	26207775	26227314
RNF6_chr13_26207775_26227314	0/0	c0011	2058	1	0	0	0	0	1	copy fasta	RNF6	chr13	26207775	26227314
RNF6_chr13_26207775_26227314	0/0	c0012	2058	1	0	0	1	0	0	copy fasta	RNF6	chr13	26207775	26227314
RNF6_chr13_26207775_26227314	0/0	c0013	2058	1	0	0	1	0	0	copy fasta	RNF6	chr13	26207775	26227314
RNF6_chr13_26207775_26227314	0/0	c0014	2058	1	1	0	0	0	0	copy fasta	RNF6	chr13	26207775	26227314
RNF6_chr13_26207775_26227314	0/0	c0015	2058	1	1	0	0	0	0	copy fasta	RNF6	chr13	26207775	26227314
RNF6_chr13_26207775_26227314	0/0	c0016	2058	1	1	0	0	0	0	copy fasta	RNF6	chr13	26207775	26227314
RNF6_chr13_26207775_26227314	0/0	c0017	2058	1	1	0	0	0	0	copy fasta	RNF6	chr13	26207775	26227314
RNF7_chr3_141733298_141752560	1/1	c0001	342	383	91	62	174	14	40	copy fasta	RNF7	chr3	141733298	141752560
RNF7_chr3_141733298_141752560	0/0	c0002	342	1	1	0	0	0	0	copy fasta	RNF7	chr3	141733298	141752560
RNF8_chr6_37348983_37399734	0/1	c0001	1458	206	58	30	98	5	14	copy fasta	RNF8	chr6	37348983	37399734
RNF8_chr6_37348983_37399734	1/0	c0002	1458	113	38	25	32	3	14	copy fasta	RNF8	chr6	37348983	37399734
RNF8_chr6_37348983_37399734	0/0	c0003	1458	3	0	3	0	0	0	copy fasta	RNF8	chr6	37348983	37399734
RNF8_chr6_37348983_37399734	0/0	c0004	1458	1	1	0	0	0	0	copy fasta	RNF8	chr6	37348983	37399734
RNF8_chr6_37348983_37399734	0/0	c0005	1458	1	1	0	0	0	0	copy fasta	RNF8	chr6	37348983	37399734
RNFT1_chr17_59947240_59969740	0/1	c0001	1308	203	68	33	84	1	16	copy fasta	RNFT1	chr17	59947240	59969740
RNFT1_chr17_59947240_59969740	1/0	c0002	1308	122	16	27	57	3	18	copy fasta	RNFT1	chr17	59947240	59969740
RNFT1_chr17_59947240_59969740	0/0	c0003	1308	4	0	0	4	0	0	copy fasta	RNFT1	chr17	59947240	59969740
RNFT1_chr17_59947240_59969740	0/0	c0004	1308	2	2	0	0	0	0	copy fasta	RNFT1	chr17	59947240	59969740
RNFT1_chr17_59947240_59969740	0/0	c0005	1308	2	0	0	0	0	2	copy fasta	RNFT1	chr17	59947240	59969740
RNFT1_chr17_59947240_59969740	0/0	c0006	1308	1	1	0	0	0	0	copy fasta	RNFT1	chr17	59947240	59969740
RNFT1_chr17_59947240_59969740	0/0	c0007	1308	1	1	0	0	0	0	copy fasta	RNFT1	chr17	59947240	59969740
RNFT1_chr17_59947240_59969740	0/0	c0008	1308	1	0	0	1	0	0	copy fasta	RNFT1	chr17	59947240	59969740
RNFT2_chr12_116733315_116858631	0/1	c0001	1335	146	27	26	63	1	28	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	c0002	1335	50	25	10	15	0	0	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	1/0	c0003	1335	17	8	2	3	1	2	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	c0004	1335	9	3	0	3	0	3	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	c0005	1335	7	7	0	0	0	0	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	c0006	1335	6	3	1	0	0	2	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	c0007	1335	6	5	1	0	0	0	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	c0008	1335	4	0	0	4	0	0	copy fasta	RNFT2	chr12	116733315	116858631