JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RNFT2_chr12_116733315_116858631	0/0	c0009	1335	4	4	0	0	0	0	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	c0010	1335	3	0	0	3	0	0	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	c0011	1335	3	3	0	0	0	0	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	c0012	1335	3	0	1	0	0	2	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	c0013	1335	3	3	0	0	0	0	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	c0014	1335	2	1	1	0	0	0	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	c0015	1335	1	1	0	0	0	0	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	c0016	1335	1	1	0	0	0	0	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	c0017	1335	1	0	0	0	0	1	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	c0018	1335	1	1	0	0	0	0	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	c0019	1335	1	0	0	1	0	0	copy fasta	RNFT2	chr12	116733315	116858631
RNGTT_chr6_88604897_88968618	1/1	c0001	1794	217	77	41	66	9	22	copy fasta	RNGTT	chr6	88604897	88968618
RNGTT_chr6_88604897_88968618	0/0	c0002	1794	1	0	1	0	0	0	copy fasta	RNGTT	chr6	88604897	88968618
RNGTT_chr6_88604897_88968618	0/0	c0003	1794	1	0	0	0	1	0	copy fasta	RNGTT	chr6	88604897	88968618
RNGTT_chr6_88604897_88968618	0/0	c0004	1794	1	1	0	0	0	0	copy fasta	RNGTT	chr6	88604897	88968618
RNH1_chr11_489515_512242	0/0	c0001	1386	227	37	38	113	9	30	copy fasta	RNH1	chr11	489515	512242
RNH1_chr11_489515_512242	0/0	c0002	1386	84	31	10	31	5	7	copy fasta	RNH1	chr11	489515	512242
RNH1_chr11_489515_512242	0/0	c0003	1386	21	6	10	0	0	5	copy fasta	RNH1	chr11	489515	512242
RNH1_chr11_489515_512242	0/1	c0004	1371	20	0	16	0	2	1	copy fasta	RNH1	chr11	489515	512242
RNH1_chr11_489515_512242	0/0	c0005	1386	18	17	0	1	0	0	copy fasta	RNH1	chr11	489515	512242
RNH1_chr11_489515_512242	0/0	c0006	1386	3	0	2	0	0	1	copy fasta	RNH1	chr11	489515	512242
RNH1_chr11_489515_512242	0/0	c0007	1386	3	3	0	0	0	0	copy fasta	RNH1	chr11	489515	512242
RNH1_chr11_489515_512242	0/0	c0008	1386	2	0	0	2	0	0	copy fasta	RNH1	chr11	489515	512242
RNH1_chr11_489515_512242	0/0	c0009	1386	2	0	0	0	0	2	copy fasta	RNH1	chr11	489515	512242
RNH1_chr11_489515_512242	0/0	c0010	1386	1	0	1	0	0	0	copy fasta	RNH1	chr11	489515	512242
RNH1_chr11_489515_512242	0/0	c0011	1386	1	0	0	1	0	0	copy fasta	RNH1	chr11	489515	512242
RNH1_chr11_489515_512242	0/0	c0012	1386	1	0	0	1	0	0	copy fasta	RNH1	chr11	489515	512242
RNH1_chr11_489515_512242	0/0	c0013	1386	1	0	0	1	0	0	copy fasta	RNH1	chr11	489515	512242
RNH1_chr11_489515_512242	0/0	c0014	1386	1	0	1	0	0	0	copy fasta	RNH1	chr11	489515	512242
RNH1_chr11_489515_512242	0/0	c0015	1386	1	0	0	1	0	0	copy fasta	RNH1	chr11	489515	512242
RNH1_chr11_489515_512242	0/0	c0016	1386	1	0	0	1	0	0	copy fasta	RNH1	chr11	489515	512242
RNLS_chr10_88279102_88588318	0/0	c0001	1029	139	24	38	55	5	17	copy fasta	RNLS	chr10	88279102	88588318
RNLS_chr10_88279102_88588318	0/0	c0002	1029	87	16	18	36	8	9	copy fasta	RNLS	chr10	88279102	88588318
RNLS_chr10_88279102_88588318	0/0	c0003	1029	2	2	0	0	0	0	copy fasta	RNLS	chr10	88279102	88588318
RNLS_chr10_88279102_88588318	0/0	c0004	1029	1	0	0	0	1	0	copy fasta	RNLS	chr10	88279102	88588318
RNLS_chr10_88279102_88588318	0/0	c0005	1029	1	1	0	0	0	0	copy fasta	RNLS	chr10	88279102	88588318
RNLS_chr10_88279102_88588318	0/0	c0006	1029	1	0	0	1	0	0	copy fasta	RNLS	chr10	88279102	88588318
RNLS_chr10_88279102_88588318	0/0	c0007	1029	1	1	0	0	0	0	copy fasta	RNLS	chr10	88279102	88588318
RNMT_chr18_13721673_13769556	1/1	c0001	1431	367	83	69	157	14	42	copy fasta	RNMT	chr18	13721673	13769556
RNMT_chr18_13721673_13769556	0/0	c0002	1431	3	3	0	0	0	0	copy fasta	RNMT	chr18	13721673	13769556
RNMT_chr18_13721673_13769556	0/0	c0003	1431	2	2	0	0	0	0	copy fasta	RNMT	chr18	13721673	13769556
RNMT_chr18_13721673_13769556	0/0	c0004	1431	2	0	0	2	0	0	copy fasta	RNMT	chr18	13721673	13769556
RNMT_chr18_13721673_13769556	0/0	c0005	1431	1	0	0	1	0	0	copy fasta	RNMT	chr18	13721673	13769556
RNMT_chr18_13721673_13769556	0/0	c0006	1431	1	0	1	0	0	0	copy fasta	RNMT	chr18	13721673	13769556
RNPC3_chr1_103520699_103560239	0/0	c0001	1554	207	64	41	67	11	24	copy fasta	RNPC3	chr1	103520699	103560239
RNPC3_chr1_103520699_103560239	1/1	c0002	1554	161	30	36	80	5	8	copy fasta	RNPC3	chr1	103520699	103560239
RNPC3_chr1_103520699_103560239	0/0	c0003	1554	1	0	0	1	0	0	copy fasta	RNPC3	chr1	103520699	103560239
RNPC3_chr1_103520699_103560239	0/0	c0004	1554	1	0	1	0	0	0	copy fasta	RNPC3	chr1	103520699	103560239
RNPEPL1_chr2_240563484_240586372	1/1	c0001	2178	298	60	66	120	12	38	copy fasta	RNPEPL1	chr2	240563484	240586372
RNPEPL1_chr2_240563484_240586372	0/0	c0002	2178	31	0	1	29	1	0	copy fasta	RNPEPL1	chr2	240563484	240586372