JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RNPEPL1_chr2_240563484_240586372	0/0	c0003	2178	18	0	7	4	1	6	copy fasta	RNPEPL1	chr2	240563484	240586372
RNPEPL1_chr2_240563484_240586372	0/0	c0004	2178	13	11	2	0	0	0	copy fasta	RNPEPL1	chr2	240563484	240586372
RNPEPL1_chr2_240563484_240586372	0/0	c0005	2178	8	8	0	0	0	0	copy fasta	RNPEPL1	chr2	240563484	240586372
RNPEPL1_chr2_240563484_240586372	0/0	c0006	2178	6	6	0	0	0	0	copy fasta	RNPEPL1	chr2	240563484	240586372
RNPEPL1_chr2_240563484_240586372	0/0	c0007	2178	5	0	0	5	0	0	copy fasta	RNPEPL1	chr2	240563484	240586372
RNPEPL1_chr2_240563484_240586372	0/0	c0008	2178	4	3	1	0	0	0	copy fasta	RNPEPL1	chr2	240563484	240586372
RNPEPL1_chr2_240563484_240586372	0/0	c0009	2178	4	0	0	4	0	0	copy fasta	RNPEPL1	chr2	240563484	240586372
RNPEPL1_chr2_240563484_240586372	0/0	c0010	2178	3	3	0	0	0	0	copy fasta	RNPEPL1	chr2	240563484	240586372
RNPEPL1_chr2_240563484_240586372	0/0	c0011	2178	2	2	0	0	0	0	copy fasta	RNPEPL1	chr2	240563484	240586372
RNPEPL1_chr2_240563484_240586372	0/0	c0012	2178	2	2	0	0	0	0	copy fasta	RNPEPL1	chr2	240563484	240586372
RNPEPL1_chr2_240563484_240586372	0/0	c0013	2178	2	2	0	0	0	0	copy fasta	RNPEPL1	chr2	240563484	240586372
RNPEPL1_chr2_240563484_240586372	0/0	c0014	2169	2	2	0	0	0	0	copy fasta	RNPEPL1	chr2	240563484	240586372
RNPEPL1_chr2_240563484_240586372	0/0	c0015	2178	1	0	1	0	0	0	copy fasta	RNPEPL1	chr2	240563484	240586372
RNPEPL1_chr2_240563484_240586372	0/0	c0016	2178	1	0	0	1	0	0	copy fasta	RNPEPL1	chr2	240563484	240586372
RNPEPL1_chr2_240563484_240586372	0/0	c0017	2178	1	0	0	1	0	0	copy fasta	RNPEPL1	chr2	240563484	240586372
RNPEPL1_chr2_240563484_240586372	0/0	c0018	2169	1	1	0	0	0	0	copy fasta	RNPEPL1	chr2	240563484	240586372
RNPEP_chr1_201977648_202011143	0/0	c0001	1953	147	17	37	77	4	12	copy fasta	RNPEP	chr1	201977648	202011143
RNPEP_chr1_201977648_202011143	0/1	c0002	1953	146	16	15	83	9	22	copy fasta	RNPEP	chr1	201977648	202011143
RNPEP_chr1_201977648_202011143	0/0	c0003	1953	103	37	23	33	3	7	copy fasta	RNPEP	chr1	201977648	202011143
RNPEP_chr1_201977648_202011143	0/0	c0004	1953	12	2	5	0	0	5	copy fasta	RNPEP	chr1	201977648	202011143
RNPEP_chr1_201977648_202011143	0/0	c0005	1953	9	9	0	0	0	0	copy fasta	RNPEP	chr1	201977648	202011143
RNPEP_chr1_201977648_202011143	1/0	c0006	1953	8	7	0	0	0	0	copy fasta	RNPEP	chr1	201977648	202011143
RNPEP_chr1_201977648_202011143	0/0	c0007	1953	8	0	0	8	0	0	copy fasta	RNPEP	chr1	201977648	202011143
RNPEP_chr1_201977648_202011143	0/0	c0008	1953	4	4	0	0	0	0	copy fasta	RNPEP	chr1	201977648	202011143
RNPEP_chr1_201977648_202011143	0/0	c0009	1953	4	1	3	0	0	0	copy fasta	RNPEP	chr1	201977648	202011143
RNPEP_chr1_201977648_202011143	0/0	c0010	1953	3	0	0	3	0	0	copy fasta	RNPEP	chr1	201977648	202011143
RNPEP_chr1_201977648_202011143	0/0	c0011	1953	2	2	0	0	0	0	copy fasta	RNPEP	chr1	201977648	202011143
RNPEP_chr1_201977648_202011143	0/0	c0012	1953	1	1	0	0	0	0	copy fasta	RNPEP	chr1	201977648	202011143
RNPEP_chr1_201977648_202011143	0/0	c0013	1953	1	1	0	0	0	0	copy fasta	RNPEP	chr1	201977648	202011143
RNPEP_chr1_201977648_202011143	0/0	c0014	1953	1	1	0	0	0	0	copy fasta	RNPEP	chr1	201977648	202011143
RNPEP_chr1_201977648_202011143	0/0	c0015	1953	1	0	0	1	0	0	copy fasta	RNPEP	chr1	201977648	202011143
RNPEP_chr1_201977648_202011143	0/0	c0016	1953	1	0	0	1	0	0	copy fasta	RNPEP	chr1	201977648	202011143
RNPEP_chr1_201977648_202011143	0/0	c0017	1953	1	0	1	0	0	0	copy fasta	RNPEP	chr1	201977648	202011143
RNPEP_chr1_201977648_202011143	0/0	c0018	1953	1	1	0	0	0	0	copy fasta	RNPEP	chr1	201977648	202011143
RNPEP_chr1_201977648_202011143	0/0	c0019	1953	1	1	0	0	0	0	copy fasta	RNPEP	chr1	201977648	202011143
RNPS1_chr16_2248120_2273126	1/1	c0001	918	367	91	68	151	14	41	copy fasta	RNPS1	chr16	2248120	2273126
RNPS1_chr16_2248120_2273126	0/0	c0002	918	3	0	0	3	0	0	copy fasta	RNPS1	chr16	2248120	2273126
RNPS1_chr16_2248120_2273126	0/0	c0003	918	1	0	1	0	0	0	copy fasta	RNPS1	chr16	2248120	2273126
RNPS1_chr16_2248120_2273126	0/0	c0004	918	1	0	1	0	0	0	copy fasta	RNPS1	chr16	2248120	2273126
RNPS1_chr16_2248120_2273126	0/0	c0005	918	1	0	0	0	0	1	copy fasta	RNPS1	chr16	2248120	2273126
RNPS1_chr16_2248120_2273126	0/0	c0006	918	1	1	0	0	0	0	copy fasta	RNPS1	chr16	2248120	2273126
RO60_chr1_193054612_193096219	1/1	c0001	1617	321	79	57	139	13	31	copy fasta	RO60	chr1	193054612	193096219
RO60_chr1_193054612_193096219	0/0	c0002	1617	6	6	0	0	0	0	copy fasta	RO60	chr1	193054612	193096219
RO60_chr1_193054612_193096219	0/0	c0003	1617	2	1	0	0	0	1	copy fasta	RO60	chr1	193054612	193096219
RO60_chr1_193054612_193096219	0/0	c0004	1617	2	0	2	0	0	0	copy fasta	RO60	chr1	193054612	193096219
RO60_chr1_193054612_193096219	0/0	c0005	1617	1	0	1	0	0	0	copy fasta	RO60	chr1	193054612	193096219
RO60_chr1_193054612_193096219	0/0	c0006	1617	1	0	0	1	0	0	copy fasta	RO60	chr1	193054612	193096219
RO60_chr1_193054612_193096219	0/0	c0007	1617	1	0	0	1	0	0	copy fasta	RO60	chr1	193054612	193096219
RO60_chr1_193054612_193096219	0/0	c0008	1617	1	0	0	0	1	0	copy fasta	RO60	chr1	193054612	193096219
RO60_chr1_193054612_193096219	0/0	c0009	1617	1	0	0	1	0	0	copy fasta	RO60	chr1	193054612	193096219