JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ROBO1_chr3_78592239_79772998	0/0	c0001	4956	16	12	3	0	0	1	copy fasta	ROBO1	chr3	78592239	79772998
ROBO1_chr3_78592239_79772998	0/0	c0002	4956	10	9	1	0	0	0	copy fasta	ROBO1	chr3	78592239	79772998
ROBO1_chr3_78592239_79772998	0/0	c0003	4956	3	1	1	0	0	1	copy fasta	ROBO1	chr3	78592239	79772998
ROBO1_chr3_78592239_79772998	0/0	c0004	4956	3	3	0	0	0	0	copy fasta	ROBO1	chr3	78592239	79772998
ROBO1_chr3_78592239_79772998	0/0	c0005	4956	3	2	1	0	0	0	copy fasta	ROBO1	chr3	78592239	79772998
ROBO1_chr3_78592239_79772998	0/0	c0006	4956	2	2	0	0	0	0	copy fasta	ROBO1	chr3	78592239	79772998
ROBO1_chr3_78592239_79772998	0/0	c0007	4956	2	2	0	0	0	0	copy fasta	ROBO1	chr3	78592239	79772998
ROBO1_chr3_78592239_79772998	0/0	c0008	4956	2	2	0	0	0	0	copy fasta	ROBO1	chr3	78592239	79772998
ROBO1_chr3_78592239_79772998	0/0	c0009	4956	1	1	0	0	0	0	copy fasta	ROBO1	chr3	78592239	79772998
ROBO1_chr3_78592239_79772998	0/0	c0010	4956	1	1	0	0	0	0	copy fasta	ROBO1	chr3	78592239	79772998
ROBO1_chr3_78592239_79772998	0/0	c0011	4956	1	1	0	0	0	0	copy fasta	ROBO1	chr3	78592239	79772998
ROBO2_chr3_77035099_77654964	0/0	c0001	5571	86	23	14	35	3	11	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	c0002	5571	49	15	12	13	3	6	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	c0003	5571	9	9	0	0	0	0	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	c0004	5571	3	3	0	0	0	0	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	c0005	5571	2	2	0	0	0	0	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	c0006	5571	2	2	0	0	0	0	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	c0007	5571	1	1	0	0	0	0	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	c0008	5571	1	1	0	0	0	0	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	c0009	5571	1	1	0	0	0	0	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	c0010	5571	1	1	0	0	0	0	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	c0011	5571	1	1	0	0	0	0	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	c0012	5571	1	1	0	0	0	0	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	c0013	5571	1	1	0	0	0	0	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	c0014	5571	1	0	0	0	0	1	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	c0015	5571	1	1	0	0	0	0	copy fasta	ROBO2	chr3	77035099	77654964
ROBO3_chr11_124860432_124886471	1/1	c0001	4161	129	7	35	68	3	14	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	c0002	4155	71	0	4	57	0	10	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	c0003	4155	53	34	4	12	1	2	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	c0004	4161	47	11	25	0	6	5	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	c0005	4155	29	25	3	0	0	1	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	c0006	4155	15	1	3	5	1	5	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	c0007	4161	7	0	0	7	0	0	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	c0008	4155	4	0	1	0	1	2	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	c0009	4155	3	0	0	3	0	0	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	c0010	4161	3	0	0	3	0	0	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	c0011	4155	3	0	0	3	0	0	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	c0012	4155	2	2	0	0	0	0	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	c0013	4161	2	2	0	0	0	0	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	c0014	4161	2	0	0	2	0	0	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	c0015	4161	2	0	0	0	0	2	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	c0016	4155	2	1	1	0	0	0	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	c0017	4155	2	2	0	0	0	0	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	c0018	4155	1	0	0	0	1	0	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	c0019	4161	1	0	0	0	0	1	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	c0020	4161	1	0	0	1	0	0	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	c0021	4161	1	0	0	0	1	0	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	c0022	4148	1	0	0	1	0	0	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	c0023	4155	1	0	0	1	0	0	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	c0024	4161	1	0	1	0	0	0	copy fasta	ROBO3	chr11	124860432	124886471