JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ROBO3_chr11_124860432_124886471	0/0	c0025	4161	1	0	0	0	0	1	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	c0026	4161	1	0	1	0	0	0	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	c0027	4155	1	1	0	0	0	0	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	c0028	4160	1	0	0	0	0	1	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	c0029	4155	1	1	0	0	0	0	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	c0030	4161	1	1	0	0	0	0	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	c0031	4161	1	0	0	0	0	1	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	c0032	4161	1	0	0	1	0	0	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	c0033	4161	1	0	0	1	0	0	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	c0034	4161	1	0	0	1	0	0	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	c0035	4161	1	0	1	0	0	0	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	c0036	4161	1	1	0	0	0	0	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	c0037	4161	1	0	0	0	0	1	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	c0038	4155	1	0	1	0	0	0	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	c0039	4155	1	1	0	0	0	0	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	c0040	4161	1	1	0	0	0	0	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	c0041	4155	1	1	0	0	0	0	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	c0042	4155	1	0	0	1	0	0	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	c0043	4161	1	0	0	1	0	0	copy fasta	ROBO3	chr11	124860432	124886471
ROBO4_chr11_124878691_124902865	1/1	c0001	3024	148	11	49	58	8	20	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	c0002	3024	61	0	4	49	0	8	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	c0003	3024	49	28	4	12	2	3	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	c0004	3024	22	17	4	0	0	1	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	c0005	3024	20	0	1	15	0	4	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	c0006	3024	19	6	3	9	0	1	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	c0007	3024	19	0	2	11	2	4	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	c0008	3024	10	9	1	0	0	0	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	c0009	3024	8	0	0	8	0	0	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	c0010	3024	5	0	0	5	0	0	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	c0011	3024	5	5	0	0	0	0	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	c0012	3024	4	4	0	0	0	0	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	c0013	3024	4	4	0	0	0	0	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	c0014	3024	2	0	2	0	0	0	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	c0015	3024	2	0	0	2	0	0	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	c0016	3024	2	2	0	0	0	0	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	c0017	3024	1	0	1	0	0	0	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	c0018	3024	1	1	0	0	0	0	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	c0019	3024	1	1	0	0	0	0	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	c0020	3024	1	1	0	0	0	0	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	c0021	3024	1	1	0	0	0	0	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	c0022	3024	1	0	0	1	0	0	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	c0023	3024	1	0	0	1	0	0	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	c0024	3024	1	0	0	1	0	0	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	c0025	3024	1	0	0	1	0	0	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	c0026	3024	1	1	0	0	0	0	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	c0027	3024	1	1	0	0	0	0	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	c0028	3024	1	0	0	1	0	0	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	c0029	3024	1	0	0	0	0	1	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	c0030	3024	1	0	1	0	0	0	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	c0031	3024	1	1	0	0	0	0	copy fasta	ROBO4	chr11	124878691	124902865