JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ROBO4_chr11_124878691_124902865	0/0	c0032	3024	1	1	0	0	0	0	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	c0033	3024	1	1	0	0	0	0	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	c0034	3024	1	1	0	0	0	0	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	c0035	3024	1	0	0	1	0	0	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	c0036	3024	1	0	0	1	0	0	copy fasta	ROBO4	chr11	124878691	124902865
ROCK1_chr18_20941906_21116813	1/1	c0001	4065	207	77	36	75	3	14	copy fasta	ROCK1	chr18	20941906	21116813
ROCK1_chr18_20941906_21116813	0/0	c0002	4065	1	0	0	1	0	0	copy fasta	ROCK1	chr18	20941906	21116813
ROCK1_chr18_20941906_21116813	0/0	c0003	4065	1	1	0	0	0	0	copy fasta	ROCK1	chr18	20941906	21116813
ROCK1_chr18_20941906_21116813	0/0	c0004	4065	1	1	0	0	0	0	copy fasta	ROCK1	chr18	20941906	21116813
ROCK1_chr18_20941906_21116813	0/0	c0005	4065	1	0	0	0	1	0	copy fasta	ROCK1	chr18	20941906	21116813
ROCK1_chr18_20941906_21116813	0/0	c0006	4065	1	1	0	0	0	0	copy fasta	ROCK1	chr18	20941906	21116813
ROCK2_chr2_11174759_11349636	1/0	c0001	4167	174	55	33	56	7	22	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/1	c0002	4167	105	20	18	49	7	10	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	c0003	4167	19	1	1	17	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	c0004	4167	7	0	0	7	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	c0005	4167	5	5	0	0	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	c0006	4167	1	0	0	1	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	c0007	4167	1	0	1	0	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	c0008	4167	1	0	0	1	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	c0009	4167	1	0	0	1	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	c0010	4167	1	0	0	1	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	c0011	4167	1	0	0	1	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	c0012	4167	1	0	0	0	0	1	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	c0013	4167	1	0	0	0	0	1	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	c0014	4167	1	0	1	0	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	c0015	4167	1	1	0	0	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROGDI_chr16_4791968_4807633	1/1	c0001	864	346	76	64	155	13	36	copy fasta	ROGDI	chr16	4791968	4807633
ROGDI_chr16_4791968_4807633	0/0	c0002	864	43	3	6	20	5	9	copy fasta	ROGDI	chr16	4791968	4807633
ROGDI_chr16_4791968_4807633	0/0	c0003	864	8	7	1	0	0	0	copy fasta	ROGDI	chr16	4791968	4807633
ROGDI_chr16_4791968_4807633	0/0	c0004	864	5	5	0	0	0	0	copy fasta	ROGDI	chr16	4791968	4807633
ROGDI_chr16_4791968_4807633	0/0	c0005	864	3	0	0	3	0	0	copy fasta	ROGDI	chr16	4791968	4807633
ROGDI_chr16_4791968_4807633	0/0	c0006	864	1	0	0	0	0	1	copy fasta	ROGDI	chr16	4791968	4807633
ROGDI_chr16_4791968_4807633	0/0	c0007	864	1	1	0	0	0	0	copy fasta	ROGDI	chr16	4791968	4807633
ROGDI_chr16_4791968_4807633	0/0	c0008	864	1	1	0	0	0	0	copy fasta	ROGDI	chr16	4791968	4807633
ROGDI_chr16_4791968_4807633	0/0	c0009	864	1	0	0	1	0	0	copy fasta	ROGDI	chr16	4791968	4807633
ROGDI_chr16_4791968_4807633	0/0	c0010	864	1	1	0	0	0	0	copy fasta	ROGDI	chr16	4791968	4807633
ROGDI_chr16_4791968_4807633	0/0	c0011	864	1	1	0	0	0	0	copy fasta	ROGDI	chr16	4791968	4807633
ROGDI_chr16_4791968_4807633	0/0	c0012	864	1	0	0	1	0	0	copy fasta	ROGDI	chr16	4791968	4807633
ROGDI_chr16_4791968_4807633	0/0	c0013	864	1	0	1	0	0	0	copy fasta	ROGDI	chr16	4791968	4807633
ROGDI_chr16_4791968_4807633	0/0	c0014	864	1	1	0	0	0	0	copy fasta	ROGDI	chr16	4791968	4807633
ROM1_chr11_62608257_62620116	0/1	c0001	1056	214	51	41	93	9	19	copy fasta	ROM1	chr11	62608257	62620116
ROM1_chr11_62608257_62620116	0/0	c0002	1056	48	13	16	9	1	9	copy fasta	ROM1	chr11	62608257	62620116
ROM1_chr11_62608257_62620116	1/0	c0003	1056	28	23	3	0	1	0	copy fasta	ROM1	chr11	62608257	62620116
ROM1_chr11_62608257_62620116	0/0	c0004	1056	2	0	2	0	0	0	copy fasta	ROM1	chr11	62608257	62620116
ROM1_chr11_62608257_62620116	0/0	c0005	1056	1	0	0	1	0	0	copy fasta	ROM1	chr11	62608257	62620116
ROM1_chr11_62608257_62620116	0/0	c0006	1056	1	0	0	1	0	0	copy fasta	ROM1	chr11	62608257	62620116
ROM1_chr11_62608257_62620116	0/0	c0007	1056	1	0	0	1	0	0	copy fasta	ROM1	chr11	62608257	62620116
ROM1_chr11_62608257_62620116	0/0	c0008	1056	1	1	0	0	0	0	copy fasta	ROM1	chr11	62608257	62620116
ROM1_chr11_62608257_62620116	0/0	c0009	1056	1	0	0	0	1	0	copy fasta	ROM1	chr11	62608257	62620116
ROM1_chr11_62608257_62620116	0/0	c0010	1056	1	0	1	0	0	0	copy fasta	ROM1	chr11	62608257	62620116