JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ROM1_chr11_62608257_62620116	0/0	c0011	1056	1	0	0	1	0	0	copy fasta	ROM1	chr11	62608257	62620116
ROM1_chr11_62608257_62620116	0/0	c0012	1056	1	0	1	0	0	0	copy fasta	ROM1	chr11	62608257	62620116
ROMO1_chr20_35694405_35705980	1/1	c0001	240	352	92	64	136	18	40	copy fasta	ROMO1	chr20	35694405	35705980
ROPN1B_chr3_125964178_125988454	1/1	c0001	639	410	87	78	184	15	44	copy fasta	ROPN1B	chr3	125964178	125988454
ROPN1B_chr3_125964178_125988454	0/0	c0002	639	13	0	0	13	0	0	copy fasta	ROPN1B	chr3	125964178	125988454
ROPN1B_chr3_125964178_125988454	0/0	c0003	639	8	0	0	8	0	0	copy fasta	ROPN1B	chr3	125964178	125988454
ROPN1B_chr3_125964178_125988454	0/0	c0004	639	6	0	0	6	0	0	copy fasta	ROPN1B	chr3	125964178	125988454
ROPN1B_chr3_125964178_125988454	0/0	c0005	639	4	0	3	0	1	0	copy fasta	ROPN1B	chr3	125964178	125988454
ROPN1B_chr3_125964178_125988454	0/0	c0006	639	3	2	1	0	0	0	copy fasta	ROPN1B	chr3	125964178	125988454
ROPN1B_chr3_125964178_125988454	0/0	c0007	639	1	1	0	0	0	0	copy fasta	ROPN1B	chr3	125964178	125988454
ROPN1B_chr3_125964178_125988454	0/0	c0008	639	1	1	0	0	0	0	copy fasta	ROPN1B	chr3	125964178	125988454
ROPN1B_chr3_125964178_125988454	0/0	c0009	639	1	0	0	1	0	0	copy fasta	ROPN1B	chr3	125964178	125988454
ROPN1B_chr3_125964178_125988454	0/0	c0010	639	1	1	0	0	0	0	copy fasta	ROPN1B	chr3	125964178	125988454
ROPN1L_chr5_10436879_10470026	1/1	c0001	693	362	81	67	158	14	40	copy fasta	ROPN1L	chr5	10436879	10470026
ROPN1L_chr5_10436879_10470026	0/0	c0002	693	5	4	1	0	0	0	copy fasta	ROPN1L	chr5	10436879	10470026
ROPN1L_chr5_10436879_10470026	0/0	c0003	693	3	3	0	0	0	0	copy fasta	ROPN1L	chr5	10436879	10470026
ROPN1L_chr5_10436879_10470026	0/0	c0004	693	2	0	0	2	0	0	copy fasta	ROPN1L	chr5	10436879	10470026
ROPN1L_chr5_10436879_10470026	0/0	c0005	693	1	1	0	0	0	0	copy fasta	ROPN1L	chr5	10436879	10470026
ROPN1L_chr5_10436879_10470026	0/0	c0006	693	1	1	0	0	0	0	copy fasta	ROPN1L	chr5	10436879	10470026
ROPN1_chr3_123964015_123997124	1/1	c0001	639	286	40	63	126	16	39	copy fasta	ROPN1	chr3	123964015	123997124
ROPN1_chr3_123964015_123997124	0/0	c0002	639	99	25	5	61	0	8	copy fasta	ROPN1	chr3	123964015	123997124
ROPN1_chr3_123964015_123997124	0/0	c0003	639	8	7	1	0	0	0	copy fasta	ROPN1	chr3	123964015	123997124
ROPN1_chr3_123964015_123997124	0/0	c0004	639	7	7	0	0	0	0	copy fasta	ROPN1	chr3	123964015	123997124
ROPN1_chr3_123964015_123997124	0/0	c0005	639	6	5	1	0	0	0	copy fasta	ROPN1	chr3	123964015	123997124
ROPN1_chr3_123964015_123997124	0/0	c0006	639	4	4	0	0	0	0	copy fasta	ROPN1	chr3	123964015	123997124
ROPN1_chr3_123964015_123997124	0/0	c0007	639	1	0	0	0	0	1	copy fasta	ROPN1	chr3	123964015	123997124
ROPN1_chr3_123964015_123997124	0/0	c0008	639	1	0	0	1	0	0	copy fasta	ROPN1	chr3	123964015	123997124
ROPN1_chr3_123964015_123997124	0/0	c0009	639	1	0	0	1	0	0	copy fasta	ROPN1	chr3	123964015	123997124
ROPN1_chr3_123964015_123997124	0/0	c0010	639	1	1	0	0	0	0	copy fasta	ROPN1	chr3	123964015	123997124
ROPN1_chr3_123964015_123997124	0/0	c0011	639	1	1	0	0	0	0	copy fasta	ROPN1	chr3	123964015	123997124
ROPN1_chr3_123964015_123997124	0/0	c0012	639	1	0	0	1	0	0	copy fasta	ROPN1	chr3	123964015	123997124
ROR1_chr1_63769017_64186498	0/0	c0001	2814	29	17	5	3	0	4	copy fasta	ROR1	chr1	63769017	64186498
ROR1_chr1_63769017_64186498	0/0	c0002	2814	15	11	3	0	0	1	copy fasta	ROR1	chr1	63769017	64186498
ROR1_chr1_63769017_64186498	0/0	c0003	2814	13	7	2	1	1	2	copy fasta	ROR1	chr1	63769017	64186498
ROR1_chr1_63769017_64186498	0/0	c0004	2814	8	0	6	0	2	0	copy fasta	ROR1	chr1	63769017	64186498
ROR1_chr1_63769017_64186498	0/0	c0005	2814	5	3	2	0	0	0	copy fasta	ROR1	chr1	63769017	64186498
ROR1_chr1_63769017_64186498	0/0	c0006	2814	5	5	0	0	0	0	copy fasta	ROR1	chr1	63769017	64186498
ROR1_chr1_63769017_64186498	0/0	c0007	2814	4	4	0	0	0	0	copy fasta	ROR1	chr1	63769017	64186498
ROR1_chr1_63769017_64186498	0/0	c0008	2814	4	4	0	0	0	0	copy fasta	ROR1	chr1	63769017	64186498
ROR1_chr1_63769017_64186498	0/0	c0009	2814	3	2	0	0	0	1	copy fasta	ROR1	chr1	63769017	64186498
ROR1_chr1_63769017_64186498	0/0	c0010	2814	3	3	0	0	0	0	copy fasta	ROR1	chr1	63769017	64186498
ROR1_chr1_63769017_64186498	0/0	c0011	2814	2	1	1	0	0	0	copy fasta	ROR1	chr1	63769017	64186498
ROR1_chr1_63769017_64186498	0/0	c0012	2814	1	0	1	0	0	0	copy fasta	ROR1	chr1	63769017	64186498
ROR1_chr1_63769017_64186498	0/0	c0013	2814	1	1	0	0	0	0	copy fasta	ROR1	chr1	63769017	64186498
ROR1_chr1_63769017_64186498	0/0	c0014	2814	1	1	0	0	0	0	copy fasta	ROR1	chr1	63769017	64186498
ROR1_chr1_63769017_64186498	0/0	c0015	2814	1	0	0	0	1	0	copy fasta	ROR1	chr1	63769017	64186498
ROR1_chr1_63769017_64186498	0/0	c0016	2814	1	1	0	0	0	0	copy fasta	ROR1	chr1	63769017	64186498
ROR2_chr9_91717601_91955228	0/0	c0001	2832	57	11	11	27	3	5	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	1/0	c0002	2832	24	9	5	4	2	3	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	c0003	2832	24	5	5	7	1	6	copy fasta	ROR2	chr9	91717601	91955228