JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ROR2_chr9_91717601_91955228	0/0	c0004	2832	19	1	2	14	1	1	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	c0005	2832	17	14	0	2	0	1	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	c0006	2832	16	1	1	12	0	2	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	c0007	2832	7	3	3	1	0	0	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	c0008	2832	7	7	0	0	0	0	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	c0009	2832	5	4	1	0	0	0	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	c0010	2832	4	0	0	2	2	0	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	c0011	2832	4	3	1	0	0	0	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	c0012	2832	3	0	0	3	0	0	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	c0013	2832	3	0	0	3	0	0	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	c0014	2832	3	2	1	0	0	0	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	c0015	2832	2	2	0	0	0	0	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	c0016	2832	2	0	0	2	0	0	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	c0017	2832	2	0	0	2	0	0	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	c0018	2832	2	1	1	0	0	0	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	c0019	2832	1	1	0	0	0	0	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	c0020	2832	1	1	0	0	0	0	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	c0021	2832	1	1	0	0	0	0	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	c0022	2832	1	0	1	0	0	0	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	c0023	2832	1	0	0	1	0	0	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	c0024	2832	1	1	0	0	0	0	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	c0025	2832	1	1	0	0	0	0	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	c0026	2832	1	0	0	1	0	0	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/1	c0027	2832	1	0	0	0	0	0	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	c0028	2832	1	1	0	0	0	0	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	c0029	2832	1	0	1	0	0	0	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	c0030	2832	1	0	1	0	0	0	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	c0031	2832	1	0	0	1	0	0	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	c0032	2832	1	0	0	1	0	0	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	c0033	2832	1	0	0	0	0	1	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	c0034	2832	1	0	0	1	0	0	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	c0035	2832	1	1	0	0	0	0	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	c0036	2832	1	0	0	0	0	1	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	c0037	2832	1	1	0	0	0	0	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	c0038	2832	1	0	0	0	1	0	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	c0039	2832	1	1	0	0	0	0	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	c0040	2832	1	1	0	0	0	0	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	c0041	2832	1	1	0	0	0	0	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	c0042	2832	1	1	0	0	0	0	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	c0043	2832	1	1	0	0	0	0	copy fasta	ROR2	chr9	91717601	91955228
RORA_chr15_60483284_61234302	0/0	c0001	1572	84	36	21	9	4	14	copy fasta	RORA	chr15	60483284	61234302
RORA_chr15_60483284_61234302	0/0	c0002	1572	10	10	0	0	0	0	copy fasta	RORA	chr15	60483284	61234302
RORA_chr15_60483284_61234302	0/0	c0003	1572	7	6	1	0	0	0	copy fasta	RORA	chr15	60483284	61234302
RORA_chr15_60483284_61234302	0/0	c0004	1572	6	4	0	0	0	2	copy fasta	RORA	chr15	60483284	61234302
RORA_chr15_60483284_61234302	0/0	c0005	1572	5	5	0	0	0	0	copy fasta	RORA	chr15	60483284	61234302
RORA_chr15_60483284_61234302	0/0	c0006	1572	2	2	0	0	0	0	copy fasta	RORA	chr15	60483284	61234302
RORA_chr15_60483284_61234302	0/0	c0007	1572	2	2	0	0	0	0	copy fasta	RORA	chr15	60483284	61234302
RORA_chr15_60483284_61234302	0/0	c0008	1572	1	1	0	0	0	0	copy fasta	RORA	chr15	60483284	61234302
RORA_chr15_60483284_61234302	0/0	c0009	1572	1	0	0	1	0	0	copy fasta	RORA	chr15	60483284	61234302
RORB_chr9_74492335_74698177	1/1	c0001	1380	194	67	37	64	6	18	copy fasta	RORB	chr9	74492335	74698177