JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RORB_chr9_74492335_74698177	0/0	c0002	1380	29	2	8	15	2	2	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	c0003	1380	1	0	0	1	0	0	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	c0004	1380	1	1	0	0	0	0	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	c0005	1380	1	0	1	0	0	0	copy fasta	RORB	chr9	74492335	74698177
RORC_chr1_151801071_151836802	1/1	c0001	1557	410	74	81	194	16	43	copy fasta	RORC	chr1	151801071	151836802
RORC_chr1_151801071_151836802	0/0	c0002	1557	9	9	0	0	0	0	copy fasta	RORC	chr1	151801071	151836802
RORC_chr1_151801071_151836802	0/0	c0003	1557	3	3	0	0	0	0	copy fasta	RORC	chr1	151801071	151836802
RORC_chr1_151801071_151836802	0/0	c0004	1557	2	0	0	2	0	0	copy fasta	RORC	chr1	151801071	151836802
RORC_chr1_151801071_151836802	0/0	c0005	1557	1	0	0	0	0	1	copy fasta	RORC	chr1	151801071	151836802
RORC_chr1_151801071_151836802	0/0	c0006	1557	1	0	0	0	0	1	copy fasta	RORC	chr1	151801071	151836802
RORC_chr1_151801071_151836802	0/0	c0007	1557	1	1	0	0	0	0	copy fasta	RORC	chr1	151801071	151836802
RORC_chr1_151801071_151836802	0/0	c0008	1557	1	0	1	0	0	0	copy fasta	RORC	chr1	151801071	151836802
RORC_chr1_151801071_151836802	0/0	c0009	1557	1	1	0	0	0	0	copy fasta	RORC	chr1	151801071	151836802
RORC_chr1_151801071_151836802	0/0	c0010	1557	1	0	0	0	0	1	copy fasta	RORC	chr1	151801071	151836802
ROS1_chr6_117282353_117430942	0/0	c0001	7026	69	27	8	26	0	8	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	1/0	c0002	7026	52	1	16	25	5	4	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0003	7026	12	7	2	3	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0004	7026	11	0	4	6	0	1	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0005	7026	11	2	4	2	3	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0006	7026	10	0	3	7	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0007	7026	10	0	3	5	1	1	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0008	7026	9	2	0	4	1	2	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0009	7026	8	1	4	3	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0010	7026	7	1	1	1	1	3	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0011	7026	6	0	0	6	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/1	c0012	7026	5	0	3	1	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0013	7026	5	4	0	1	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0014	7026	5	0	0	5	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0015	7026	5	1	0	4	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0016	7026	4	1	2	1	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0017	7026	4	0	1	3	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0018	7026	4	3	1	0	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0019	7026	4	3	0	0	0	1	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0020	7026	3	0	3	0	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0021	7026	3	2	0	1	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0022	7026	3	2	0	1	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0023	7026	3	0	1	0	0	2	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0024	7026	3	0	0	3	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0025	7026	2	0	0	2	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0026	7026	2	0	0	2	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0027	7026	2	2	0	0	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0028	7026	2	0	0	2	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0029	7026	1	0	1	0	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0030	7026	1	0	0	0	1	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0031	7026	1	0	1	0	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0032	7026	1	0	0	1	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0033	7026	1	0	0	1	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0034	7026	1	0	0	1	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0035	7026	1	0	0	0	0	1	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0036	7026	1	0	0	1	0	0	copy fasta	ROS1	chr6	117282353	117430942